RchiOBHm_Chr2g0108711

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
20060658 .. 20061018
361 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 156 bp
ATGAGTTTGGAAGAGCTCCAAGAAGGATCGAAGGCAATCTCAGATGTTCTGGAACATGATCTACCTAAGATGCAGAAGGAAAAACCAGAAAACATCTCTTCAACTGCTTCCAACATATGTGACCGTTGTGGACGAAACTTGTACCGACTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003824 GO:0004587 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006536 GO:0006560 GO:0006561 GO:0006591 GO:0006593 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006972 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009084 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009987 GO:0012501 GO:0016053 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019544 GO:0019752 GO:0019842 GO:0030170 GO:0031974 GO:0033554 GO:0034050 GO:0036094 GO:0042538 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046394 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051640 GO:0051641 GO:0051646 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070279 GO:0071704 GO:0097159 GO:0098542 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 ko01110 ko01130 map00330 map01100 map01110 map01130
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

51

Amino Acids

5.83

Weight (kDa)

5.19

Isoelectric Point (pI)

66.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 34
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 1 cut(s) 102
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 18
BarI GAAGNNNNNNTAC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 18
BmsI GCATC 1 cut(s) 60
BseMII CTCAG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 26, 58
BspCNI CTCAG 1 cut(s) 53
BspPI GGATC 1 cut(s) 34
BspQI GCTCTTC 1 cut(s) 6
BssMI GATC 2 cut(s) 26, 58
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 6, 103
BstDEI CTNAG 2 cut(s) 40, 66
BstKTI GATC 2 cut(s) 29, 61
BstMBI GATC 2 cut(s) 26, 58
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 56
CviJI RGCY 1 cut(s) 16
CviKI_1 RGCY 1 cut(s) 16
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 40, 66
DpnI GATC 2 cut(s) 28, 60
DpnII GATC 2 cut(s) 26, 58
Eam1104I CTCTTC 2 cut(s) 6, 103
EarI CTCTTC 2 cut(s) 6, 103
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 57, 116, 118
FatI CATG 1 cut(s) 55
FauNDI CATATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 59
HinfI GANTC 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 17, 25, 70
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 40, 66
Hsp92II CATG 1 cut(s) 59
Kzo9I GATC 2 cut(s) 26, 58
LguI GCTCTTC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 2 cut(s) 35, 99
LweI GCATC 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 28, 60
MboI GATC 2 cut(s) 26, 58
MboII GAAGA 3 cut(s) 23, 90, 142
MhlI GDGCHC 1 cut(s) 18
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 135
NdeI CATATG 1 cut(s) 116
NdeII GATC 2 cut(s) 26, 58
NlaIII CATG 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 6
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 18
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SacI GAGCTC 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 26, 58
SchI GAGTC 1 cut(s) 141
SduI GDGCHC 1 cut(s) 18
SetI ASST 2 cut(s) 18, 67
SfaNI GCATC 1 cut(s) 60
SgeI CNNG 5 cut(s) 32, 62, 68, 98, 151
SstI GAGCTC 1 cut(s) 18
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 29
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.