RchiOBHm_Chr2g0110651

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
22215108 .. 22216218
1111 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGGATTTAGGATTTGAATTTGGGGTGCGCCAAATATTTTCACCCAAAATTTTTTTGGGTACAACTATGCACAAATGTAAGAAATATCATTCTGTATTGTCGTCAACGGACGTCAGGAGGCGAGAGTATTTGGAGAGAGAACAAGCTAGCAGTGGCTTACTGGCTATGATAACGAGAGCTGCTATGGATAAAATGGACGGTATCATCGACACAGTTTCAGCCCCTCATTCTCTCTTGCCATTGATAGACTTGTTGAAGATGGATGGAAAGTTAATTGTGTTAATTGCTGGTAGTGCAATTGGGGGAATGAAAGAGACTCAAGAGATGGTAGATTTTGCAGCAAAGCATAACATCACAGCTGATGTTGAAGTCTTCCAATGGATTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.39

Weight (kDa)

6.41

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
AcsI RAATTY 2 cut(s) 17, 48
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 3 cut(s) 17, 256, 368
AluBI AGCT 3 cut(s) 146, 179, 359
AluI AGCT 3 cut(s) 146, 179, 359
Alw26I GTCTC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 179, 338
ApoI RAATTY 2 cut(s) 17, 48
AspLEI GCGC 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 33
AsuNHI GCTAGC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 166, 350
BccI CCATC 3 cut(s) 253, 257, 319
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 180, 339
BlsI GCNGC 2 cut(s) 181, 340
BmtI GCTAGC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 166, 350
BsmAI GTCTC 1 cut(s) 308
BspOI GCTAGC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 200, 214
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 268
BstHHI GCGC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 308
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 166, 350
BstV2I GAAGAC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 60
CviJI RGCY 6 cut(s) 146, 156, 164, 179, 221, 359
CviKI_1 RGCY 6 cut(s) 146, 156, 164, 179, 221, 359
CviQI GTAC 1 cut(s) 60
FaiI YATR 4 cut(s) 68, 167, 185, 348
Fnu4HI GCNGC 2 cut(s) 180, 339
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 180, 339
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 29
GluI GCNGC 2 cut(s) 180, 339
HhaI GCGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 111
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 1 cut(s) 316
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 115, 320
Hpy8I GTNNAC 1 cut(s) 105
HpyCH4III ACNGT 2 cut(s) 200, 214
HpyCH4IV ACGT 2 cut(s) 111, 386
HpyCH4V TGCA 3 cut(s) 70, 296, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpySE526I ACGT 2 cut(s) 111, 386
Hsp92I GRCGYC 1 cut(s) 111
HspAI GCGC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 100, 146, 273
Lsp1109I GCAGC 2 cut(s) 166, 350
MaeI CTAG 1 cut(s) 147
MaeII ACGT 2 cut(s) 111, 386
MboII GAAGA 2 cut(s) 268, 364
MfeI CAATTG 1 cut(s) 297
MluCI AATT 5 cut(s) 17, 48, 273, 282, 297
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 2 cut(s) 111, 234
MseI TTAA 2 cut(s) 272, 281
MspA1I CMGCKG 1 cut(s) 359
MunI CAATTG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 293
NheI GCTAGC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PkrI GCNGC 2 cut(s) 181, 340
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Ppu21I YACGTR 1 cut(s) 387
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 272, 281
SatI GCNGC 2 cut(s) 180, 339
SchI GAGTC 1 cut(s) 310
SetI ASST 5 cut(s) 114, 148, 181, 361, 389
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 5 cut(s) 17, 48, 273, 282, 297
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 200, 214
TaiI ACGT 2 cut(s) 114, 389
TaqI TCGA 1 cut(s) 207
TasI AATT 5 cut(s) 17, 48, 273, 282, 297
Tru1I TTAA 2 cut(s) 272, 281
Tru9I TTAA 2 cut(s) 272, 281
TscAI CASTG 1 cut(s) 157
TseI GCWGC 2 cut(s) 179, 338
TspDTI ATGAA 1 cut(s) 323
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 157
XapI RAATTY 2 cut(s) 17, 48
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XspI CTAG 1 cut(s) 147
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.