Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22594324 .. 22598190

Gene Structure 3867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATAAACAGAAGCGCGGGGTTTAAATTTAGTGAAAAACATCCTTTCGCGGCCAACCAAAGGACGATCTCATTTATATACACCCTTTGGTGCACTTTCCTCTCTTCCCCTTATATCTACCACAGCGAAAGCGACACCGTTCCCCTCCAACCTTCCTCCCAATCCGACATCAACGAGATCAAAAACCAAATCAATGCCAGCATCCAATCGAGCCCCGCCACCGTCCTCCCCGCCAAGCCTCCCAGCCCCATCGCGCCTCCATCCCCGTCTCCTCCTCCCCCTTCATCCAATCTAACCTCTCCAACCGACCCCTCCCTCCTCTTCCAAGCCCAAGCAGCCGCCGTCTGTTCCCGCCCTCCTCGCGTCCCCTCCGCCGCCAACAACAATGGCCCCATCAACATCGCCGCTTCTGGGTTTGGGATACCGTCAAGAGGACTTGTGTCGTATTGTCATCAATTTGAAGCTCGTCGTCTTCCCAACCCCTACTGTGTGGACCCCGAAAAGGCTCTCAGGGATTGGGGTCTCTGCGGTCCTTTCTTCTTCATTGTGTTCTTGGGTCCTACTCTGTCCTGGTCTGCATCTGTCAAGAAGGGATTTGAGGAGGAGTTGTTGGAGAAGGAGGTGACGAAAGCGGCGGAGTCGCTGTCGTCTCGTACACTTAACCCCACGAACCCAACACACCCATTTCTCCAGAACGCACTCAACTCCTCCGTCTTCCATTCTAAGACGGGTGTGTCGTTTCTGTCAGTCCTGGCTGGAACTCAACGATTTCTGGGATTTGGGTTGATTCCTCTCTTATGGCAGTCCCTCATTCTTAAGGAAAAGGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

277

Amino Acids

30.11

Weight (kDa)

8.81

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	733
AccII	CGCG	4 cut(s)	17, 50, 254, 363
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	4 cut(s)	60, 411, 431, 502
AflII	CTTAAG	1 cut(s)	815
AgsI	TTSAA	1 cut(s)	461
AjnI	CCWGG	2 cut(s)	569, 750
AluBI	AGCT	1 cut(s)	464
AluI	AGCT	1 cut(s)	464
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	3 cut(s)	273, 527, 654
Alw44I	GTGCAC	1 cut(s)	91
AoxI	GGCC	2 cut(s)	51, 388
ApaLI	GTGCAC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	17, 256
AspS9I	GGNCC	4 cut(s)	389, 493, 530, 557
AsuHPI	GGTGA	1 cut(s)	634
AvaII	GGWCC	3 cut(s)	493, 530, 557
BaeGI	GKGCMC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	464, 706
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	3 cut(s)	257, 268, 401
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	571, 752
BciVI	GTATCC	1 cut(s)	414
BcoDI	GTCTC	3 cut(s)	273, 527, 654
BfrI	CTTAAG	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	6 cut(s)	51, 336, 339, 375, 405, 633
BlsI	GCNGC	6 cut(s)	52, 337, 340, 376, 406, 634
Bme1390I	CCNGG	2 cut(s)	571, 752
Bme18I	GGWCC	3 cut(s)	493, 530, 557
BmgT120I	GGNCC	4 cut(s)	389, 493, 530, 557
BmiI	GGNNCC	3 cut(s)	391, 495, 558
BmrFI	CCNGG	2 cut(s)	571, 752
BmsI	GCATC	2 cut(s)	210, 587
BoxI	GACNNNNGTC	1 cut(s)	439
BpiI	GAAGAC	2 cut(s)	464, 706
BpmI	CTGGAG	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	527
BsaXI	ACNNNNNCTCC	4 cut(s)	593, 623, 629, 659
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 411, 431, 502
BseBI	CCWGG	2 cut(s)	571, 752
BseGI	GGATG	5 cut(s)	40, 201, 260, 284, 832
BseLI	CCNNNNNNNGG	4 cut(s)	60, 411, 431, 502
BseMII	CTCAG	1 cut(s)	523
BseRI	GAGGAG	7 cut(s)	261, 264, 308, 348, 614, 617, 697
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	347
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	4 cut(s)	17, 50, 254, 363
BshFI	GGCC	2 cut(s)	53, 390
BsiHKAI	GWGCWC	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	350, 790
BslI	CCNNNNNNNGG	4 cut(s)	60, 411, 431, 502
BsmAI	GTCTC	3 cut(s)	273, 527, 654
BsmBI	CGTCTC	2 cut(s)	273, 654
BsmFI	GGGAC	2 cut(s)	350, 790
BsnI	GGCC	2 cut(s)	53, 390
Bso31I	GGTCTC	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	95, 215
Bsp143I	GATC	2 cut(s)	66, 177
BspANI	GGCC	2 cut(s)	53, 390
BspCNI	CTCAG	1 cut(s)	522
BspFNI	CGCG	4 cut(s)	17, 50, 254, 363
BspLI	GGNNCC	3 cut(s)	391, 495, 558
BspTI	CTTAAG	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	527
BssMI	GATC	2 cut(s)	66, 177
Bst2UI	CCWGG	2 cut(s)	571, 752
Bst4CI	ACNGT	4 cut(s)	139, 223, 426, 488
Bst6I	CTCTTC	2 cut(s)	109, 326
BstAFI	CTTAAG	1 cut(s)	815
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	509, 723
BstF5I	GGATG	5 cut(s)	40, 201, 260, 284, 832
BstFNI	CGCG	4 cut(s)	17, 50, 254, 363
BstHHI	GCGC	2 cut(s)	17, 256
BstKTI	GATC	2 cut(s)	69, 180
BstMAI	GTCTC	3 cut(s)	273, 527, 654
BstMBI	GATC	2 cut(s)	66, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 360
BstNI	CCWGG	2 cut(s)	571, 752
BstPAI	GACNNNNGTC	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	569, 750
BstSLI	GKGCMC	1 cut(s)	95
BstUI	CGCG	4 cut(s)	17, 50, 254, 363
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	2 cut(s)	464, 706
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	53, 390
BtgZI	GCGATG	2 cut(s)	235, 385
BtsCI	GGATG	5 cut(s)	40, 201, 260, 284, 832
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	2 cut(s)	17, 256
Cfr13I	GGNCC	4 cut(s)	389, 493, 530, 557
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	654
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	2 cut(s)	509, 723
DpnI	GATC	2 cut(s)	68, 179
DpnII	GATC	2 cut(s)	66, 177
DraI	TTTAAA	1 cut(s)	25
DrdI	GACNNNNNNGTC	1 cut(s)	733
DseDI	GACNNNNNNGTC	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	109, 326
EarI	CTCTTC	2 cut(s)	109, 326
EciI	GGCGGA	2 cut(s)	361, 650
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	3 cut(s)	493, 530, 557
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	569, 750
EcoT38I	GRGCYC	1 cut(s)	215
Esp3I	CGTCTC	2 cut(s)	273, 654
FaiI	YATR	4 cut(s)	77, 79, 114, 799
FaqI	GGGAC	2 cut(s)	350, 790
FauI	CCCGC	4 cut(s)	10, 223, 238, 359
Fnu4HI	GCNGC	6 cut(s)	51, 336, 339, 375, 405, 633
FokI	GGATG	4 cut(s)	27, 188, 247, 271
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	6 cut(s)	51, 336, 339, 375, 405, 633
GlaI	GCGC	2 cut(s)	16, 255
GluI	GCNGC	6 cut(s)	51, 336, 339, 375, 405, 633
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	674
HaeIII	GGCC	2 cut(s)	53, 390
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	2 cut(s)	17, 256
Hin6I	GCGC	2 cut(s)	15, 254
HinP1I	GCGC	2 cut(s)	15, 254
HinfI	GANTC	2 cut(s)	638, 787
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	3 cut(s)	93, 493, 656
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	429, 586, 691
Hpy8I	GTNNAC	3 cut(s)	93, 493, 656
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	4 cut(s)	162, 291, 583, 610
HpyCH4III	ACNGT	4 cut(s)	139, 223, 426, 488
HpyCH4V	TGCA	2 cut(s)	93, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 360
HpyF3I	CTNAG	2 cut(s)	509, 723
HspAI	GCGC	2 cut(s)	15, 254
Kzo9I	GATC	2 cut(s)	66, 177
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	2 cut(s)	210, 587
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	2 cut(s)	68, 179
MboI	GATC	2 cut(s)	66, 177
MboII	GAAGA	6 cut(s)	96, 313, 464, 529, 532, 706
MhlI	GDGCHC	2 cut(s)	95, 215
MluCI	AATT	2 cut(s)	26, 455
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	4 cut(s)	172, 189, 326, 591
MseI	TTAA	3 cut(s)	24, 660, 816
MspCI	CTTAAG	1 cut(s)	815
MspR9I	CCNGG	2 cut(s)	571, 752
MvaI	CCWGG	2 cut(s)	571, 752
MvnI	CGCG	4 cut(s)	17, 50, 254, 363
MwoI	GCNNNNNNNGC	2 cut(s)	335, 360
NdeII	GATC	2 cut(s)	66, 177
NlaIV	GGNNCC	3 cut(s)	391, 495, 558
NmuCI	GTSAC	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	734
PfeI	GAWTC	1 cut(s)	787
PkrI	GCNGC	6 cut(s)	52, 337, 340, 376, 406, 634
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PpuMI	RGGWCCY	1 cut(s)	557
PshAI	GACNNNNGTC	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	569, 750
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	2 cut(s)	569, 750
PspN4I	GGNNCC	3 cut(s)	391, 495, 558
PspPI	GGNCC	4 cut(s)	389, 493, 530, 557
PspPPI	RGGWCCY	1 cut(s)	557
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
SaqAI	TTAA	3 cut(s)	24, 660, 816
SatI	GCNGC	6 cut(s)	51, 336, 339, 375, 405, 633
Sau3AI	GATC	2 cut(s)	66, 177
Sau96I	GGNCC	4 cut(s)	389, 493, 530, 557
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	571, 752
SduI	GDGCHC	2 cut(s)	95, 215
SetI	ASST	4 cut(s)	154, 299, 466, 624
SfaNI	GCATC	2 cut(s)	210, 587
SinI	GGWCC	3 cut(s)	493, 530, 557
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	2 cut(s)	26, 455
StyD4I	CCNGG	2 cut(s)	569, 750
TaaI	ACNGT	4 cut(s)	139, 223, 426, 488
TaqI	TCGA	1 cut(s)	209
TasI	AATT	2 cut(s)	26, 455
TauI	GCSGC	5 cut(s)	53, 341, 377, 407, 635
TfiI	GAWTC	1 cut(s)	787
Tru1I	TTAA	3 cut(s)	24, 660, 816
Tru9I	TTAA	3 cut(s)	24, 660, 816
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	2 cut(s)	273, 532
TspGWI	ACGGA	1 cut(s)	700
Vha464I	CTTAAG	1 cut(s)	815
VneI	GTGCAC	1 cut(s)	91
VpaK11BI	GGWCC	3 cut(s)	493, 530, 557
XapI	RAATTY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.