RchiOBHm_Chr2g0111551

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
23191352 .. 23191971
620 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
ATGGATGTCTTATACCACATTATTCCATACCTCAAATTAGCTCACGATGGACTTGAAGCCGGTATTTATGAATTTCTAGAAGCTCATACTCCGGATTGGATTATTCATGATTTTTCCCCTCATTGGTTGCCACCAATAGCTACAAAGCTAGGCATATCACGAGCCTATTTCAGCATCCTCAATGCTGCCTTTGCAAAGAGATCGAGGATAGTAGAGCAATCTGATGAAGACAAGGAGGATAAGAGCTGGACTATAATTGTCGACTGGTTGAACAAGCAAGAGAAGGGGACTGTTGTTTATGTTGCGTTAGGAACTGAAGTGAATCCAAGCCGAGAAGACTTCACAGAATTGGCTCTAGGATTGGAACTTTCTGGGTTGCCTTTCTTTTGGGTACTGAGGAAATTACCAAGTGGTTCAGGGGATGGTAACTTGGAGATCAAGTTACCAGACGGGTTTGAGCATCGAACCAAGGGCCAGGGGCTTGTTTGGAGAACCGGGCACCTCGGCCCAAAATCTTGGCTCACAAGTCTATTGGCGGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

181

Amino Acids

20.41

Weight (kDa)

5.61

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 498
AccI GTMKAC 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 1 cut(s) 536
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 2 cut(s) 56, 271
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 5 cut(s) 41, 83, 140, 148, 246
AluI AGCT 5 cut(s) 41, 83, 140, 148, 246
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 2 cut(s) 472, 505
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 472, 506
AsuC2I CCSGG 1 cut(s) 496
BaeGI GKGCMC 1 cut(s) 501
BanI GGYRCC 1 cut(s) 498
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 234, 342
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 41, 416
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 1 cut(s) 476
BcnI CCSGG 1 cut(s) 496
BfaI CTAG 3 cut(s) 77, 149, 356
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 476, 496
BmgT120I GGNCC 2 cut(s) 472, 506
BmiI GGNNCC 1 cut(s) 500
BmrFI CCNGG 2 cut(s) 476, 496
BmsI GCATC 2 cut(s) 183, 469
BpiI GAAGAC 2 cut(s) 234, 342
BpuMI CCSGG 1 cut(s) 496
BsaJI CCNNGG 3 cut(s) 468, 475, 502
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 269
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 468, 475, 502
BseGI GGATG 3 cut(s) 10, 174, 427
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 501
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 474, 507
BshNI GGYRCC 1 cut(s) 498
BsiSI CCGG 3 cut(s) 60, 92, 495
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 2 cut(s) 474, 507
Bsp1286I GDGCHC 1 cut(s) 501
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 200, 435
BspACI CCGC 1 cut(s) 536
BspANI GGCC 2 cut(s) 474, 507
BspCNI CTCAG 1 cut(s) 387
BspEI TCCGGA 1 cut(s) 91
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 500
BspT107I GGYRCC 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 3 cut(s) 468, 475, 502
BssMI GATC 2 cut(s) 200, 435
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 3 cut(s) 10, 174, 427
BstKTI GATC 2 cut(s) 203, 438
BstMBI GATC 2 cut(s) 200, 435
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 474, 494
BstSLI GKGCMC 1 cut(s) 501
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 2 cut(s) 234, 342
BstXI CCANNNNNNTGG 1 cut(s) 516
BsuRI GGCC 2 cut(s) 474, 507
BtsCI GGATG 3 cut(s) 10, 174, 427
CciI TCATGA 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 472, 506
Csp6I GTAC 1 cut(s) 392
CviAII CATG 1 cut(s) 107
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 1 cut(s) 395
DpnI GATC 2 cut(s) 202, 437
DpnII GATC 2 cut(s) 200, 435
Eco130I CCWWGG 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 1 cut(s) 110
FaiI YATR 8 cut(s) 13, 28, 69, 87, 108, 155, 254, 300
FaqI GGGAC 1 cut(s) 301
FatI CATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 3 cut(s) 17, 161, 434
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 3 cut(s) 77, 149, 356
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 2 cut(s) 474, 507
HapII CCGG 3 cut(s) 60, 92, 495
Hin1II CATG 1 cut(s) 110
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 322
HpaII CCGG 3 cut(s) 60, 92, 495
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 6 cut(s) 44, 77, 92, 107, 159, 543
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 200, 435
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 183, 469
MaeI CTAG 3 cut(s) 77, 149, 356
MaeIII GTNAC 2 cut(s) 425, 441
MalI GATC 2 cut(s) 202, 437
MboI GATC 2 cut(s) 200, 435
MboII GAAGA 2 cut(s) 239, 347
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 5 cut(s) 35, 71, 255, 347, 401
MnlI CCTC 7 cut(s) 41, 129, 188, 198, 229, 390, 512
MroI TCCGGA 1 cut(s) 91
MspI CCGG 3 cut(s) 60, 92, 495
MspR9I CCNGG 2 cut(s) 476, 496
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 496
NdeII GATC 2 cut(s) 200, 435
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 500
NmeAIII GCCGAG 2 cut(s) 356, 483
PagI TCATGA 1 cut(s) 106
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 1 cut(s) 500
PspPI GGNCC 2 cut(s) 472, 506
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
SalI GTCGAC 1 cut(s) 260
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 200, 435
Sau96I GGNCC 2 cut(s) 472, 506
ScrFI CCNGG 2 cut(s) 476, 496
SduI GDGCHC 1 cut(s) 501
SetI ASST 7 cut(s) 33, 43, 85, 142, 150, 248, 504
SfaNI GCATC 2 cut(s) 183, 469
Sse9I AATT 5 cut(s) 35, 71, 255, 347, 401
SsiI CCGC 1 cut(s) 536
SspMI CTAG 3 cut(s) 77, 149, 356
StyD4I CCNGG 2 cut(s) 474, 494
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 3 cut(s) 203, 261, 463
TasI AATT 5 cut(s) 35, 71, 255, 347, 401
TfiI GAWTC 1 cut(s) 322
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 84, 95, 240
XapI RAATTY 1 cut(s) 71
XbaI TCTAGA 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 3 cut(s) 77, 149, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.