RchiOBHm_Chr2g0112901

Reticulon-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
25008361 .. 25008729
369 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGGAGGCTGCGGCAGTTTGGCCAGAACAAAATCCTAGAAGAAGAAGAAGAAGGAAAAAAAAAGATTCACCAGTAGTTGTCTTTGGCGGTGGAAAGTTGGCTAATGTTTTCTCATGGAGGGATAAGAAGTTGTCGGGAGGTATTCTTGGTGAAGCAACAGTGATGTGGGTTCTCTCTGAATTGCTTGAATACTACCTGCTAACTTTGGTTGCACACCTCTTGATTGTTGTTCTTCTTGTGGTCCAATGCTTTAAATTCAGTCTCCACCCAAGATTCCAGATATTCAAATTCCAGAGAAGCCGTTTGCACAGATTGTCTCCGCAATTACATTTAAGATCAACGGGGATTTTGTTGTCATCAGGGATATAG

Protein Analysis

122

Amino Acids

14.05

Weight (kDa)

11.19

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 34 - 105 3.8e-12 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 204
AciI CCGC 3 cut(s) 11, 87, 320
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 2 cut(s) 254, 287
AgsI TTSAA 2 cut(s) 188, 286
Alw26I GTCTC 2 cut(s) 266, 321
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 2 cut(s) 254, 287
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 60, 161
AvaII GGWCC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 22
BceAI ACGGC 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 266, 321
BfaI CTAG 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 204
BisI GCNGC 2 cut(s) 9, 12
BlsI GCNGC 2 cut(s) 10, 13
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 71
BshFI GGCC 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 266, 321
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 335
BspACI CCGC 3 cut(s) 11, 87, 320
BspANI GGCC 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 71
BssMI GATC 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 160
BstKTI GATC 1 cut(s) 338
BstMAI GTCTC 2 cut(s) 266, 321
BstMBI GATC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 165
BveI ACCTGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 241
CviAII CATG 1 cut(s) 114
CviJI RGCY 4 cut(s) 8, 22, 101, 300
CviKI_1 RGCY 4 cut(s) 8, 22, 101, 300
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
DraI TTTAAA 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 241
FaeI CATG 1 cut(s) 117
FaiI YATR 2 cut(s) 115, 367
FatI CATG 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 9, 12
Fsp4HI GCNGC 2 cut(s) 9, 12
FspBI CTAG 1 cut(s) 36
GluI GCNGC 2 cut(s) 9, 12
HaeIII GGCC 1 cut(s) 22
Hin1II CATG 1 cut(s) 117
HinfI GANTC 2 cut(s) 65, 273
HphI GGTGA 2 cut(s) 60, 161
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 4 cut(s) 135, 220, 277, 292
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 212, 307
Hsp92II CATG 1 cut(s) 117
Kzo9I GATC 1 cut(s) 335
LpnPI CCDG 6 cut(s) 36, 84, 209, 290, 305, 345
MaeI CTAG 1 cut(s) 36
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 5 cut(s) 51, 54, 57, 60, 224
MlsI TGGCCA 1 cut(s) 22
MluCI AATT 4 cut(s) 179, 254, 287, 323
MluNI TGGCCA 1 cut(s) 22
MnlI CCTC 3 cut(s) 111, 131, 227
Mox20I TGGCCA 1 cut(s) 22
MscI TGGCCA 1 cut(s) 22
MseI TTAA 2 cut(s) 252, 332
Msp20I TGGCCA 1 cut(s) 22
NdeII GATC 1 cut(s) 335
NlaIII CATG 1 cut(s) 117
PfeI GAWTC 2 cut(s) 65, 273
PkrI GCNGC 2 cut(s) 10, 13
PspPI GGNCC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 252, 332
SatI GCNGC 2 cut(s) 9, 12
Sau3AI GATC 1 cut(s) 335
Sau96I GGNCC 1 cut(s) 241
SetI ASST 3 cut(s) 142, 198, 219
SinI GGWCC 1 cut(s) 241
Sse9I AATT 4 cut(s) 179, 254, 287, 323
SsiI CCGC 3 cut(s) 11, 87, 320
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 160
TasI AATT 4 cut(s) 179, 254, 287, 323
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 65, 273
Tru1I TTAA 2 cut(s) 252, 332
Tru9I TTAA 2 cut(s) 252, 332
TscAI CASTG 1 cut(s) 165
TseI GCWGC 1 cut(s) 8
TspRI CASTG 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 2 cut(s) 254, 287
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.