RchiOBHm_Chr2g0114661

Sugar (and other) transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029889
Physical Location & Seq
Forward (+)
26543643 .. 26544649
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 828 bp
ATGACACTAGTGCTGGTCAATCTAACTAGTATTATGCAGCGAGCTGATGAGTCCCTTTTGCCTGGAGCCTACAAAAAAGTAGGAGCCTCTCTTCACACAGACCCAACTAGGTTGGGCTCTCTGACTCTATTTCGATCCATTGTCCAATCTTCCTACTACCCACTTGCTACTTATCTTGCTACGCATCACAACCGAGCCCATGTCATTGCTCTTGGTGCTTATCTTTCTATGGGCTGCCGCCACTTTTCTCGCTGGCTTCTTCATGTTGCTATTTCGAGAGGTTTAAATGGTATTGGAATTGTCATAGTCATTCCTGCCATTCAGTCACTTGTTGCTGACTCAACAGATGATAACAACCAATATGGTACAACATTTGGATGGTTACAACTAACAGGAAATCTAGGCTCCATAATAGGTGGTCTTTTTTCTATACTAATAGCCTCCACTTCAGTAATAGGTATAGATAGTTGGAGAATTGCTTTCCATCTGGTTGGGCTTATTAGTGTCATAGTCGGTATATTGGTTCGCCTCTTCGCTAATGATCCGCACTATATAGAGAACAATGGTAGAACTAAAGATGAAATGCCGTGTACTTTTTCAGAAGAAGTGAAGAACCTGATTAAAGAATCCAAGTCAGTTATCAGAATCCCAACTTTTCAAATACTCATTGCTCAGGCTGTCTTTGGATCATTCCTCTGGTCAGAAACGGAAGTTCTTTGGACCATATTTATAATTGGCGCCTCACTTGGAAGTCTCTTTGGAGGAAAAATGGGGGATGTCCTTGCAAAACTGACGCAGTCGGAAGTAACCTGGGTTTACAAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

275

Amino Acids

30.14

Weight (kDa)

8.52

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 8 - 251 1.5e-20 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029889)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0114661
rosa_samantha Rh2CG253000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
AccB1I GGYRCC 1 cut(s) 737
AciI CCGC 2 cut(s) 238, 545
AclWI GGATC 3 cut(s) 129, 536, 694
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 2 cut(s) 367, 592
AgsI TTSAA 1 cut(s) 659
AhlI ACTAGT 2 cut(s) 7, 26
AjnI CCWGG 2 cut(s) 61, 809
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 758
AlwI GGATC 3 cut(s) 129, 536, 694
ApeKI GCWGC 2 cut(s) 37, 234
AspLEI GCGC 1 cut(s) 740
AspS9I GGNCC 1 cut(s) 720
AvaII GGWCC 1 cut(s) 720
BanI GGYRCC 1 cut(s) 737
BanII GRGCYC 2 cut(s) 119, 199
BbvI GCAGC 2 cut(s) 49, 221
BccI CCATC 2 cut(s) 372, 492
BceAI ACGGC 1 cut(s) 571
BciT130I CCWGG 2 cut(s) 63, 811
BcoDI GTCTC 1 cut(s) 758
BcuI ACTAGT 2 cut(s) 7, 26
BfaI CTAG 4 cut(s) 8, 27, 108, 401
BfoI RGCGCY 1 cut(s) 741
BisI GCNGC 3 cut(s) 38, 235, 238
BlsI GCNGC 3 cut(s) 39, 236, 239
Bme1390I CCNGG 2 cut(s) 63, 811
Bme18I GGWCC 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 720
BmiI GGNNCC 4 cut(s) 67, 85, 406, 739
BmrFI CCNGG 2 cut(s) 63, 811
BmsI GCATC 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 672
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 1 cut(s) 810
Bse3DI GCAATG 2 cut(s) 204, 666
BseBI CCWGG 2 cut(s) 63, 811
BseDI CCNNGG 1 cut(s) 810
BseGI GGATG 2 cut(s) 383, 781
BseMI GCAATG 2 cut(s) 204, 666
BseMII CTCAG 1 cut(s) 686
BseXI GCAGC 2 cut(s) 49, 221
BshNI GGYRCC 1 cut(s) 737
BslFI GGGAC 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 758
BsmFI GGGAC 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 119, 199
Bsp143I GATC 3 cut(s) 134, 541, 686
BspACI CCGC 2 cut(s) 238, 545
BspCNI CTCAG 1 cut(s) 685
BspLI GGNNCC 4 cut(s) 67, 85, 406, 739
BspPI GGATC 3 cut(s) 129, 536, 694
BspT107I GGYRCC 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 204, 666
BssECI CCNNGG 1 cut(s) 810
BssMI GATC 3 cut(s) 134, 541, 686
BssNI GRCGYC 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 63, 811
Bst6I CTCTTC 2 cut(s) 96, 536
BstACI GRCGYC 1 cut(s) 738
BstC8I GCNNGC 2 cut(s) 42, 254
BstDEI CTNAG 1 cut(s) 672
BstF5I GGATG 2 cut(s) 383, 781
BstH2I RGCGCY 1 cut(s) 741
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 3 cut(s) 137, 544, 689
BstMAI GTCTC 1 cut(s) 758
BstMBI GATC 3 cut(s) 134, 541, 686
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 2 cut(s) 63, 811
BstSCI CCNGG 2 cut(s) 61, 809
BstV1I GCAGC 2 cut(s) 49, 221
BstXI CCANNNNNNTGG 1 cut(s) 491
BtsCI GGATG 2 cut(s) 383, 781
Cac8I GCNNGC 2 cut(s) 42, 254
CfoI GCGC 1 cut(s) 740
Cfr13I GGNCC 1 cut(s) 720
CseI GACGC 1 cut(s) 802
Csp6I GTAC 2 cut(s) 366, 591
CviAII CATG 2 cut(s) 200, 263
CviQI GTAC 2 cut(s) 366, 591
DdeI CTNAG 1 cut(s) 672
DinI GGCGCC 1 cut(s) 739
DpnI GATC 3 cut(s) 136, 543, 688
DpnII GATC 3 cut(s) 134, 541, 686
DraI TTTAAA 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 96, 536
EarI CTCTTC 2 cut(s) 96, 536
Eco24I GRGCYC 2 cut(s) 119, 199
Eco47I GGWCC 1 cut(s) 720
Eco57I CTGAAG 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 61, 809
EcoT38I GRGCYC 2 cut(s) 119, 199
EgeI GGCGCC 1 cut(s) 739
EheI GGCGCC 1 cut(s) 739
FaeI CATG 2 cut(s) 203, 266
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 199, 262
Fnu4HI GCNGC 3 cut(s) 38, 235, 238
FokI GGATG 2 cut(s) 390, 788
FriOI GRGCYC 2 cut(s) 119, 199
Fsp4HI GCNGC 3 cut(s) 38, 235, 238
FspBI CTAG 4 cut(s) 8, 27, 108, 401
GlaI GCGC 1 cut(s) 739
GluI GCNGC 3 cut(s) 38, 235, 238
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 741
HgaI GACGC 1 cut(s) 802
HhaI GCGC 1 cut(s) 740
Hin1I GRCGYC 1 cut(s) 738
Hin1II CATG 2 cut(s) 203, 266
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HinfI GANTC 5 cut(s) 50, 124, 338, 626, 645
Hpy166II GTNNAC 2 cut(s) 591, 817
Hpy188I TCNGA 5 cut(s) 123, 601, 644, 703, 802
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 2 cut(s) 591, 817
HpyCH4V TGCA 2 cut(s) 37, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 672
Hsp92I GRCGYC 1 cut(s) 738
Hsp92II CATG 2 cut(s) 203, 266
HspAI GCGC 1 cut(s) 738
KasI GGCGCC 1 cut(s) 737
Kzo9I GATC 3 cut(s) 134, 541, 686
LmnI GCTCC 3 cut(s) 65, 83, 410
Lsp1109I GCAGC 2 cut(s) 49, 221
LweI GCATC 1 cut(s) 193
MaeI CTAG 4 cut(s) 8, 27, 108, 401
MaeIII GTNAC 3 cut(s) 324, 381, 805
MalI GATC 3 cut(s) 136, 543, 688
MboI GATC 3 cut(s) 134, 541, 686
MboII GAAGA 6 cut(s) 83, 141, 251, 523, 614, 622
MhlI GDGCHC 2 cut(s) 119, 199
MluCI AATT 3 cut(s) 297, 474, 732
Mly113I GGCGCC 1 cut(s) 738
MlyI GAGTC 3 cut(s) 59, 118, 332
MmeI TCCRAC 2 cut(s) 449, 780
MnlI CCTC 7 cut(s) 97, 272, 451, 539, 704, 751, 755
MseI TTAA 2 cut(s) 284, 621
MslI CAYNNNNRTG 1 cut(s) 376
MspR9I CCNGG 2 cut(s) 63, 811
MvaI CCWGG 2 cut(s) 63, 811
MwoI GCNNNNNNNGC 1 cut(s) 215
NarI GGCGCC 1 cut(s) 738
NdeII GATC 3 cut(s) 134, 541, 686
NlaIII CATG 2 cut(s) 203, 266
NlaIV GGNNCC 4 cut(s) 67, 85, 406, 739
NmuCI GTSAC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 626, 645
PflFI GACNNNGTC 1 cut(s) 796
PkrI GCNGC 3 cut(s) 39, 236, 239
PleI GAGTC 3 cut(s) 58, 118, 332
PluTI GGCGCC 1 cut(s) 741
PpsI GAGTC 3 cut(s) 58, 118, 332
PsiI TTATAA 1 cut(s) 731
Psp6I CCWGG 2 cut(s) 61, 809
PspGI CCWGG 2 cut(s) 61, 809
PspN4I GGNNCC 4 cut(s) 67, 85, 406, 739
PspPI GGNCC 1 cut(s) 720
PsyI GACNNNGTC 1 cut(s) 796
RsaI GTAC 2 cut(s) 367, 592
RsaNI GTAC 2 cut(s) 366, 591
RseI CAYNNNNRTG 1 cut(s) 376
SaqAI TTAA 2 cut(s) 284, 621
SatI GCNGC 3 cut(s) 38, 235, 238
Sau3AI GATC 3 cut(s) 134, 541, 686
Sau96I GGNCC 1 cut(s) 720
SchI GAGTC 3 cut(s) 59, 118, 332
ScrFI CCNGG 2 cut(s) 63, 811
SduI GDGCHC 2 cut(s) 119, 199
SetI ASST 7 cut(s) 46, 113, 283, 418, 460, 618, 812
SfaNI GCATC 1 cut(s) 193
SfoI GGCGCC 1 cut(s) 739
SinI GGWCC 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 376
SpeI ACTAGT 2 cut(s) 7, 26
Sse9I AATT 3 cut(s) 297, 474, 732
SsiI CCGC 2 cut(s) 238, 545
SspDI GGCGCC 1 cut(s) 737
SspMI CTAG 4 cut(s) 8, 27, 108, 401
StyD4I CCNGG 2 cut(s) 61, 809
TaqI TCGA 2 cut(s) 133, 275
TasI AATT 3 cut(s) 297, 474, 732
TatI WGTACW 1 cut(s) 590
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 2 cut(s) 626, 645
Tru1I TTAA 2 cut(s) 284, 621
Tru9I TTAA 2 cut(s) 284, 621
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 2 cut(s) 37, 234
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 2 cut(s) 251, 594
TspGWI ACGGA 1 cut(s) 722
Tth111I GACNNNGTC 1 cut(s) 796
VpaK11BI GGWCC 1 cut(s) 720
XspI CTAG 4 cut(s) 8, 27, 108, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.