RchiOBHm_Chr2g0116801

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
29032659 .. 29034063
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGCTGTTGTCCAGTTTGGGGGCTTCTGCAATTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTACTGCGGGGGCTTGTGGAGGCATTGCTGCATCACTCATTCGTGTTCCAACGGAGGTTGTAAAGCAAAGGATGCAAACGGGGCAATTCACATCTGCCTCTGCTGCTGTTCGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGTAGGTTTTTCCACTGTGGATAATCATACTAGTTCATACTTTGTTTCCCTCTTTCCTATATATAAAAGAAACAAATTACTTCTCTGTTGTGTTTCTTAA

Protein Analysis

119

Amino Acids

12.75

Weight (kDa)

9.63

Isoelectric Point (pI)

26.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 30 - 87 6.7e-11 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 116, 260
AfeI AGCGCT 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 1 cut(s) 247
AhlI ACTAGT 1 cut(s) 290
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Aor51HI AGCGCT 1 cut(s) 97
ApeKI GCWGC 3 cut(s) 137, 212, 230
AspLEI GCGC 1 cut(s) 98
BbvI GCAGC 3 cut(s) 124, 199, 217
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 3 cut(s) 138, 213, 231
BlsI GCNGC 3 cut(s) 139, 214, 232
BmsI GCATC 2 cut(s) 149, 171
Bpu10I CCTNAGC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 132
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 3 cut(s) 124, 199, 217
BslI CCNNNNNNNGG 1 cut(s) 18
BspACI CCGC 2 cut(s) 116, 260
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 92, 234
BstF5I GGATG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 181, 190, 212
BstV1I GCAGC 3 cut(s) 124, 199, 217
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 273
CfoI GCGC 1 cut(s) 98
CviJI RGCY 4 cut(s) 23, 104, 122, 243
CviKI_1 RGCY 4 cut(s) 23, 104, 122, 243
DdeI CTNAG 2 cut(s) 92, 234
Eco47III AGCGCT 1 cut(s) 97
FaiI YATR 7 cut(s) 48, 258, 288, 298, 320, 322, 324
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 138, 213, 231
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 3 cut(s) 138, 213, 231
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 97
GluI GCNGC 3 cut(s) 138, 213, 231
HaeII RGCGCY 1 cut(s) 99
HhaI GCGC 1 cut(s) 98
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 29, 140, 184
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 190, 212
HpyF3I CTNAG 2 cut(s) 92, 234
HspAI GCGC 1 cut(s) 96
LpnPI CCDG 2 cut(s) 25, 96
Lsp1109I GCAGC 3 cut(s) 124, 199, 217
LweI GCATC 2 cut(s) 149, 171
MaeI CTAG 1 cut(s) 291
MluCI AATT 4 cut(s) 30, 65, 194, 335
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 2 cut(s) 19, 182
MnlI CCTC 5 cut(s) 122, 157, 217, 232, 320
MseI TTAA 2 cut(s) 71, 358
MwoI GCNNNNNNNGC 3 cut(s) 181, 190, 212
PkrI GCNGC 3 cut(s) 139, 214, 232
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 71, 358
SatI GCNGC 3 cut(s) 138, 213, 231
SchI GAGTC 1 cut(s) 246
SetI ASST 4 cut(s) 55, 106, 168, 268
SfaNI GCATC 2 cut(s) 149, 171
SgeI CNNG 7 cut(s) 24, 95, 129, 135, 164, 201, 303
SpeI ACTAGT 1 cut(s) 290
Sse9I AATT 4 cut(s) 30, 65, 194, 335
SsiI CCGC 2 cut(s) 116, 260
SspMI CTAG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 277
TasI AATT 4 cut(s) 30, 65, 194, 335
Tru1I TTAA 2 cut(s) 71, 358
Tru9I TTAA 2 cut(s) 71, 358
TscAI CASTG 1 cut(s) 280
TseI GCWGC 3 cut(s) 137, 212, 230
TspDTI ATGAA 2 cut(s) 63, 285
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 280
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.