Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29889675 .. 29896974

Gene Structure 7300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGCATCCTTCATATCTTCAAAAGACCTCGAGTTATAACATATTAAATGGACAAAACTATTTGCTCTCCCACTTTATTCATGATTTAGCTTCTCTGGTGAATTTTGCAGAGGGTGTTATAGCAGGAGGTACAGCTGGTGTTGTTGTTGAAACAGCCTTATATCCCATTGATACTATAAAGACAAGATTGCAGGCAGGCCCCATTTTGGAGCCTGGGTCAGTGAAGCAGGATGTTGATTTTGGGGCTTCTGCAATTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTACTGTGGGAGCTTGTGAAGGCATTGCTGCTTCACTCATTCGTGTTGTAAGGCAAAGGATGCAAACGGGGCAATTCACATCCTTCTCTGCTGCTGTTCGCTTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGGATATGGATCATTTTTATTGCGAGATTTGCCATTTGATGCAATTCAATTTTGTCTATATGAGCAGCTTCGGATAGATTATAAAGTGGCGATAAGCTCCTCTTTTTTGCCTATTATATGCTTGCAGATTATAGTATATAATTGGCAAGGTCCCATTTTTTTCATGTGCACGCCCCCGCACGTGTGGCGAATTTTCAAGCCATACACGTGGACAACTTTGGGTGACTTGGAGCCTGTGTGGCCGTTAGGCATGCACACATGGGCAAAGAGAGAGCTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGTTATAACCACTCCCCTTAATGTGATTAAAACTAGACTAATGGTACAGACTATTGTGAGGGAAGAAGGACCTCCTGCTCTTTTGAAGCTCAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

299

Amino Acids

33.11

Weight (kDa)

8.27

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	35 - 68	2.4e-07	Mitochondrial carrier protein
Mito_carr	PF00153	106 - 182	1.1e-10	Mitochondrial carrier protein
Mito_carr	PF00153	253 - 285	2.3e-06	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	39, 555, 806
AarI	CACCTGC	1 cut(s)	776
Acc36I	ACCTGC	1 cut(s)	776
AciI	CCGC	2 cut(s)	473, 650
AclWI	GGATC	2 cut(s)	490, 749
AcoI	YGGCCR	1 cut(s)	713
AcsI	RAATTY	2 cut(s)	103, 663
AcvI	CACGTG	2 cut(s)	655, 681
AfaI	GTAC	2 cut(s)	133, 846
AfeI	AGCGCT	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	2 cut(s)	654, 678
AgsI	TTSAA	6 cut(s)	23, 152, 460, 521, 670, 886
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	9 cut(s)	92, 137, 329, 347, 541, 570, 748, 779, 889
AluI	AGCT	9 cut(s)	92, 137, 329, 347, 541, 570, 748, 779, 889
Alw21I	GWGCWC	2 cut(s)	644, 750
Alw44I	GTGCAC	1 cut(s)	640
AlwI	GGATC	2 cut(s)	490, 749
Ama87I	CYCGRG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	322
AoxI	GGCC	2 cut(s)	199, 713
ApaLI	GTGCAC	1 cut(s)	640
ApeKI	GCWGC	4 cut(s)	362, 425, 443, 538
ApoI	RAATTY	2 cut(s)	103, 663
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	200, 623, 869
AsuHPI	GGTGA	2 cut(s)	112, 707
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	623, 869
BaeGI	GKGCMC	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	750
BbrPI	CACGTG	2 cut(s)	655, 681
Bbv12I	GWGCWC	2 cut(s)	644, 750
BbvI	GCAGC	4 cut(s)	349, 412, 430, 550
BceAI	ACGGC	1 cut(s)	700
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	1 cut(s)	834
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	776
BglI	GCCNNNNNGGC	1 cut(s)	712
BisI	GCNGC	4 cut(s)	363, 426, 444, 539
BlsI	GCNGC	4 cut(s)	364, 427, 445, 540
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	2 cut(s)	623, 869
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	200, 623, 869
BmiI	GGNNCC	4 cut(s)	202, 213, 625, 705
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	3 cut(s)	16, 384, 502
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	447
BsaAI	YACGTR	2 cut(s)	655, 681
BsaBI	GATNNNNATC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 695, 725
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	802
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	4 cut(s)	7, 238, 399, 413
BseJI	GATNNNNATC	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	1 cut(s)	802
BseRI	GAGGAG	1 cut(s)	562
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	4 cut(s)	349, 412, 430, 550
BshFI	GGCC	2 cut(s)	201, 715
BsiHKAI	GWGCWC	2 cut(s)	644, 750
BsiHKCI	CYCGRG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	609
BsmI	GAATGC	1 cut(s)	769
BsnI	GGCC	2 cut(s)	201, 715
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	644, 750
Bsp143I	GATC	2 cut(s)	482, 754
BspACI	CCGC	2 cut(s)	473, 650
BspANI	GGCC	2 cut(s)	201, 715
BspCNI	CTCAG	1 cut(s)	751
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	4 cut(s)	202, 213, 625, 705
BspMI	ACCTGC	1 cut(s)	776
BspPI	GGATC	2 cut(s)	490, 749
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	802
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	482, 754
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstBAI	YACGTR	2 cut(s)	655, 681
BstC8I	GCNNGC	5 cut(s)	195, 199, 596, 644, 725
BstDEI	CTNAG	3 cut(s)	317, 447, 759
BstF5I	GGATG	4 cut(s)	7, 238, 399, 413
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	485, 757
BstMBI	GATC	2 cut(s)	482, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	394, 403, 502, 658, 712
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	644
BstV1I	GCAGC	4 cut(s)	349, 412, 430, 550
BstXI	CCANNNNNNTGG	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	201, 715
BtsCI	GGATG	4 cut(s)	7, 238, 399, 413
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	776
Cac8I	GCNNGC	5 cut(s)	195, 199, 596, 644, 725
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	200, 623, 869
Csp6I	GTAC	2 cut(s)	132, 845
CviAII	CATG	4 cut(s)	83, 637, 724, 732
CviQI	GTAC	2 cut(s)	132, 845
DdeI	CTNAG	3 cut(s)	317, 447, 759
DpnI	GATC	2 cut(s)	484, 756
DpnII	GATC	2 cut(s)	482, 754
EaeI	YGGCCR	1 cut(s)	713
Ecl136II	GAGCTC	1 cut(s)	748
Eco24I	GRGCYC	1 cut(s)	750
Eco47I	GGWCC	2 cut(s)	623, 869
Eco47III	AGCGCT	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	748
Eco72I	CACGTG	2 cut(s)	655, 681
Eco88I	CYCGRG	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	748
EcoO109I	RGGNCCY	3 cut(s)	200, 623, 869
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	750
FaeI	CATG	4 cut(s)	86, 640, 727, 735
FalI	AAGNNNNNCTT	4 cut(s)	440, 472, 559, 591
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	4 cut(s)	82, 636, 723, 731
FauI	CCCGC	2 cut(s)	466, 657
Fnu4HI	GCNGC	4 cut(s)	363, 426, 444, 539
FokI	GGATG	3 cut(s)	245, 400, 406
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	4 cut(s)	363, 426, 444, 539
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	4 cut(s)	363, 426, 444, 539
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	201, 715
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	4 cut(s)	86, 640, 727, 735
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	1 cut(s)	465
HphI	GGTGA	2 cut(s)	112, 707
Hpy166II	GTNNAC	2 cut(s)	642, 684
Hpy188I	TCNGA	1 cut(s)	546
Hpy188III	TCNNGA	3 cut(s)	83, 308, 758
Hpy8I	GTNNAC	2 cut(s)	642, 684
HpyAV	CCTTC	4 cut(s)	21, 347, 427, 860
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	654, 680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	394, 403, 502, 658, 712
HpyF3I	CTNAG	3 cut(s)	317, 447, 759
HpySE526I	ACGT	2 cut(s)	654, 680
Hsp92II	CATG	4 cut(s)	86, 640, 727, 735
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	482, 754
LmnI	GCTCC	6 cut(s)	4, 211, 344, 575, 703, 776
Lsp1109I	GCAGC	4 cut(s)	349, 412, 430, 550
LweI	GCATC	3 cut(s)	16, 384, 502
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	2 cut(s)	654, 680
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	2 cut(s)	484, 756
MboI	GATC	2 cut(s)	482, 754
MboII	GAAGA	2 cut(s)	11, 875
MhlI	GDGCHC	2 cut(s)	644, 750
MluCI	AATT	9 cut(s)	103, 255, 290, 407, 516, 521, 613, 663, 771
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	40, 106, 122, 445, 583, 852, 882
MseI	TTAA	6 cut(s)	47, 296, 794, 819, 828, 898
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	769
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	5 cut(s)	394, 403, 502, 658, 712
NdeII	GATC	2 cut(s)	482, 754
NlaIII	CATG	4 cut(s)	86, 640, 727, 735
NlaIV	GGNNCC	4 cut(s)	202, 213, 625, 705
NmuCI	GTSAC	1 cut(s)	695
NspI	RCATGY	1 cut(s)	727
PaeI	GCATGC	1 cut(s)	727
PaeR7I	CTCGAG	1 cut(s)	31
PagI	TCATGA	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	776
PctI	GAATGC	1 cut(s)	769
PkrI	GCNGC	4 cut(s)	364, 427, 445, 540
PleI	GAGTC	1 cut(s)	459
PmaCI	CACGTG	2 cut(s)	655, 681
PmlI	CACGTG	2 cut(s)	655, 681
PpsI	GAGTC	1 cut(s)	459
Ppu21I	YACGTR	2 cut(s)	655, 681
PpuMI	RGGWCCY	2 cut(s)	623, 869
PsiI	TTATAA	3 cut(s)	39, 555, 806
Psp124BI	GAGCTC	1 cut(s)	750
Psp5II	RGGWCCY	2 cut(s)	623, 869
Psp6I	CCWGG	1 cut(s)	214
PspCI	CACGTG	2 cut(s)	655, 681
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	4 cut(s)	202, 213, 625, 705
PspPI	GGNCC	3 cut(s)	200, 623, 869
PspPPI	RGGWCCY	2 cut(s)	623, 869
PspXI	VCTCGAGB	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	133, 846
RsaNI	GTAC	2 cut(s)	132, 845
RseI	CAYNNNNRTG	1 cut(s)	679
SacI	GAGCTC	1 cut(s)	750
SaqAI	TTAA	6 cut(s)	47, 296, 794, 819, 828, 898
SatI	GCNGC	4 cut(s)	363, 426, 444, 539
Sau3AI	GATC	2 cut(s)	482, 754
Sau96I	GGNCC	3 cut(s)	200, 623, 869
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	644, 750
SfaNI	GCATC	3 cut(s)	16, 384, 502
Sfr274I	CTCGAG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	623, 869
SlaI	CTCGAG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SphI	GCATGC	1 cut(s)	727
Sse9I	AATT	9 cut(s)	103, 255, 290, 407, 516, 521, 613, 663, 771
SsiI	CCGC	2 cut(s)	473, 650
SspMI	CTAG	1 cut(s)	834
SstI	GAGCTC	1 cut(s)	750
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	657, 683
TaqI	TCGA	1 cut(s)	32
TasI	AATT	9 cut(s)	103, 255, 290, 407, 516, 521, 613, 663, 771
Tru1I	TTAA	6 cut(s)	47, 296, 794, 819, 828, 898
Tru9I	TTAA	6 cut(s)	47, 296, 794, 819, 828, 898
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	4 cut(s)	362, 425, 443, 538
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	3 cut(s)	71, 288, 625
TspRI	CASTG	1 cut(s)	228
VneI	GTGCAC	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	623, 869
XapI	RAATTY	2 cut(s)	103, 663
XceI	RCATGY	1 cut(s)	727
XhoI	CTCGAG	1 cut(s)	31
XspI	CTAG	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.