RchiOBHm_Chr2g0117961

Cell morphogenesis N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029723
Physical Location & Seq
Reverse (-)
30290993 .. 30292124
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1098 bp
ATGTCACCATTACTTGTTCGGGGTTCTCTTGATGGTCCGTTAAGGAATACTAGTGGGAGCCTCAGCTGGCGGACTGCAGGTGTGACAGGCCGAAGTATCTCAGGCCCAATAGGTCCAATGCCTCCTGAGCTGAAGATTGTTCCTGCAAATGCAGGCAGATCAGGCCAGCTCCTTCCAGCATTAGTAAATATGTCGGGGCCTTTAATGGGGGTGAGAAGTTCAACTGGAAGTCTGCGGAGTCGCCATGTGTCTCGGGACAGTGGAGACTACCTTATTGATACTCCAAATTCTGGTGAAGATGGGTTGCACTCTGGGGTTGCCATGCATGGCATCAGTACTAAAGAACTGCAGTCAGCCTTGCAGGGGCATCAGCAACATTCACTGACTCATGCAGATATAGCATTGATTTTACTTGCAGAAATTGCATATGAAAATGATGAAGATTTTCGGGAGCACTTGCCTCTGCTCTTTCATGTCACATTTGTTTCGATGGATAGTTCAGAAGACATTGTGCTCGAACACTATCAACATCTCCTTGTTAATCTTCTATACTCTCTTGCAGGAAGGCACTTGGAACTATATGAGGTTGAAAATTGTGATAGAGAGAACAAGCAGCAGGTTGTGAGCCTGATCAAATATGTTCAGTCAAAGCGAGGAAGCATGATGTGGGAAAATGAGGACCCCACGGTTGTGAGATCTGAACTTCCAAGTGCAGCACTATTATCTGCACTAGTTCGGAGCATGGTAGATGCTATCTTCTTTCAAGGAGATCTTCGAGAGACTTGGGGTGTAGAGGCACTGAAATGGGCCATGGAGTGCACGTCGAGACACTTTGCCTGCCGCTCGCATCAGATTTACCGTGCATTGCGGCCTAGTGTAACAAGTGATACATGTGTATTGCTCCTCCGGTGCCTTCATAGATGCCTAGGAAATCCAGTACCTCCAGTTTTGGGTTTCATAATGGAAATTCTGTTGACATTGCAAGTGATGGTAAAGAACATGGAACCAGAAAAAGTGATACTTTACCCCCCAACTGTTTTGGGGCTGTGTAGCTATGATGCACACGGATTTTGTTCATGTCTACTGCCAAGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOR2-PAG1_C MOR2-PAG1_N MOR2-PAG1_mid

Protein Analysis

365

Amino Acids

40.26

Weight (kDa)

6.0

Isoelectric Point (pI)

57.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOR2-PAG1_mid PF14228 1 - 318 3.5e-185 Cell morphogenesis central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029723)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117961
rosa_samantha Rh2DG297700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 68
Acc36I ACCTGC 2 cut(s) 68, 607
AccB1I GGYRCC 1 cut(s) 909
AccB7I CCANNNNNTGG 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 843
AccI GTMKAC 1 cut(s) 1081
AciI CCGC 4 cut(s) 70, 235, 841, 868
AcsI RAATTY 2 cut(s) 286, 966
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 2 cut(s) 337, 939
AfiI CCNNNNNNNGG 4 cut(s) 206, 290, 363, 950
AflIII ACRYGT 1 cut(s) 890
AgsI TTSAA 3 cut(s) 222, 590, 764
AhlI ACTAGT 2 cut(s) 50, 730
AjiI CACGTC 1 cut(s) 822
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 4 cut(s) 66, 130, 169, 1053
AluI AGCT 4 cut(s) 66, 130, 169, 1053
Alw21I GWGCWC 3 cut(s) 456, 516, 821
Alw26I GTCTC 4 cut(s) 255, 258, 773, 820
Alw44I GTGCAC 1 cut(s) 817
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 6 cut(s) 88, 103, 163, 197, 807, 869
ApaLI GTGCAC 1 cut(s) 817
ApeKI GCWGC 2 cut(s) 613, 713
ApoI RAATTY 2 cut(s) 286, 966
Asp700I GAANNNNTTC 1 cut(s) 444
AspA2I CCTAGG 1 cut(s) 925
AspS9I GGNCC 6 cut(s) 35, 104, 113, 197, 679, 807
AsuHPI GGTGA 2 cut(s) 223, 305
AvaI CYCGRG 1 cut(s) 252
AvaII GGWCC 3 cut(s) 35, 113, 679
AvrII CCTAGG 1 cut(s) 925
BaeGI GKGCMC 1 cut(s) 821
BaeI ACNNNNGTAYC 2 cut(s) 879, 912
BanI GGYRCC 1 cut(s) 909
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 3 cut(s) 456, 516, 821
BbvCI CCTCAGC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 625, 725
BccI CCATC 4 cut(s) 26, 293, 484, 982
BclI TGATCA 1 cut(s) 630
BcoDI GTCTC 4 cut(s) 255, 258, 773, 820
BcuI ACTAGT 2 cut(s) 50, 730
BfaI CTAG 4 cut(s) 51, 731, 873, 926
BfmI CTRYAG 2 cut(s) 75, 347
BfuAI ACCTGC 2 cut(s) 68, 607
BglII AGATCT 2 cut(s) 695, 769
BisI GCNGC 4 cut(s) 614, 714, 841, 869
BlnI CCTAGG 1 cut(s) 925
BlsI GCNGC 4 cut(s) 615, 715, 842, 870
BmcAI AGTACT 1 cut(s) 337
Bme18I GGWCC 3 cut(s) 35, 113, 679
BmeT110I CYCGRG 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 822
BmgT120I GGNCC 6 cut(s) 35, 104, 113, 197, 679, 807
BmiI GGNNCC 5 cut(s) 59, 198, 681, 911, 1005
BmsI GCATC 6 cut(s) 339, 376, 739, 856, 911, 1048
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 1 cut(s) 927
Bpu10I CCTNAGC 2 cut(s) 62, 126
BsaJI CCNNGG 3 cut(s) 684, 810, 925
BsaWI WCCGGW 1 cut(s) 906
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 290, 363, 950
Bse1I ACTGG 3 cut(s) 229, 935, 944
Bse3DI GCAATG 2 cut(s) 863, 977
BseDI CCNNGG 3 cut(s) 684, 810, 925
BseLI CCNNNNNNNGG 4 cut(s) 206, 290, 363, 950
BseMI GCAATG 2 cut(s) 863, 977
BseMII CTCAG 3 cut(s) 76, 114, 117
BseNI ACTGG 3 cut(s) 229, 935, 944
BseRI GAGGAG 1 cut(s) 893
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 2 cut(s) 625, 725
BsgI GTGCAG 2 cut(s) 711, 732
BshFI GGCC 6 cut(s) 90, 105, 165, 199, 809, 871
BshNI GGYRCC 1 cut(s) 909
BsiHKAI GWGCWC 3 cut(s) 456, 516, 821
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 907
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 4 cut(s) 206, 290, 363, 950
BsmAI GTCTC 4 cut(s) 255, 258, 773, 820
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 6 cut(s) 90, 105, 165, 199, 809, 871
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 3 cut(s) 456, 516, 821
Bsp143I GATC 4 cut(s) 158, 630, 695, 769
Bsp19I CCATGG 1 cut(s) 810
BspACI CCGC 4 cut(s) 70, 235, 841, 868
BspANI GGCC 6 cut(s) 90, 105, 165, 199, 809, 871
BspCNI CTCAG 3 cut(s) 75, 113, 118
BspLI GGNNCC 5 cut(s) 59, 198, 681, 911, 1005
BspMAI CTGCAG 2 cut(s) 79, 351
BspMI ACCTGC 2 cut(s) 68, 607
BspT107I GGYRCC 1 cut(s) 909
BsrBI CCGCTC 1 cut(s) 843
BsrDI GCAATG 2 cut(s) 863, 977
BsrI ACTGG 3 cut(s) 229, 935, 944
BssECI CCNNGG 3 cut(s) 684, 810, 925
BssMI GATC 4 cut(s) 158, 630, 695, 769
BssT1I CCWWGG 2 cut(s) 810, 925
Bst4CI ACNGT 4 cut(s) 260, 688, 860, 1036
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 5 cut(s) 68, 154, 167, 838, 845
BstDEI CTNAG 3 cut(s) 62, 100, 126
BstDSI CCRYGG 2 cut(s) 684, 810
BstKTI GATC 4 cut(s) 161, 633, 698, 772
BstMAI GTCTC 4 cut(s) 255, 258, 773, 820
BstMBI GATC 4 cut(s) 158, 630, 695, 769
BstMWI GCNNNNNNNGC 4 cut(s) 127, 162, 398, 422
BstNSI RCATGY 1 cut(s) 894
BstSFI CTRYAG 2 cut(s) 75, 347
BstSLI GKGCMC 1 cut(s) 821
BstV1I GCAGC 2 cut(s) 625, 725
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 2 cut(s) 695, 769
BstYI RGATCY 2 cut(s) 695, 769
BsuRI GGCC 6 cut(s) 90, 105, 165, 199, 809, 871
BtgI CCRYGG 2 cut(s) 684, 810
BtrI CACGTC 1 cut(s) 822
BtsIMutI CAGTG 3 cut(s) 265, 380, 797
BveI ACCTGC 2 cut(s) 68, 607
Cac8I GCNNGC 5 cut(s) 68, 154, 167, 838, 845
Cfr13I GGNCC 6 cut(s) 35, 104, 113, 197, 679, 807
Csp6I GTAC 2 cut(s) 336, 938
CviQI GTAC 2 cut(s) 336, 938
DdeI CTNAG 3 cut(s) 62, 100, 126
DpnI GATC 4 cut(s) 160, 632, 697, 771
DpnII GATC 4 cut(s) 158, 630, 695, 769
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 810, 925
Eco47I GGWCC 3 cut(s) 35, 113, 679
Eco57I CTGAAG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 252
EcoO109I RGGNCCY 2 cut(s) 197, 679
EcoT14I CCWWGG 2 cut(s) 810, 925
EcoT22I ATGCAT 1 cut(s) 327
ErhI CCWWGG 2 cut(s) 810, 925
FalI AAGNNNNNCTT 4 cut(s) 756, 788, 1005, 1037
FaqI GGGAC 1 cut(s) 269
FauNDI CATATG 1 cut(s) 427
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 1081
Fnu4HI GCNGC 4 cut(s) 614, 714, 841, 869
Fsp4HI GCNGC 4 cut(s) 614, 714, 841, 869
FspBI CTAG 4 cut(s) 51, 731, 873, 926
GluI GCNGC 4 cut(s) 614, 714, 841, 869
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 6 cut(s) 90, 105, 165, 199, 809, 871
HapII CCGG 1 cut(s) 907
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HinfI GANTC 2 cut(s) 238, 385
HpaII CCGG 1 cut(s) 907
HphI GGTGA 2 cut(s) 223, 305
Hpy166II GTNNAC 3 cut(s) 819, 975, 1082
Hpy188I TCNGA 4 cut(s) 502, 700, 738, 852
Hpy188III TCNNGA 6 cut(s) 29, 125, 254, 449, 776, 825
Hpy8I GTNNAC 3 cut(s) 819, 975, 1082
Hpy99I CGWCG 1 cut(s) 826
HpyAV CCTTC 3 cut(s) 182, 558, 923
HpyCH4III ACNGT 4 cut(s) 260, 688, 860, 1036
HpyCH4IV ACGT 1 cut(s) 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 162, 398, 422
HpyF3I CTNAG 3 cut(s) 62, 100, 126
HpySE526I ACGT 1 cut(s) 821
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 4 cut(s) 158, 630, 695, 769
LmnI GCTCC 5 cut(s) 57, 174, 451, 738, 906
Lsp1109I GCAGC 2 cut(s) 625, 725
LweI GCATC 6 cut(s) 339, 376, 739, 856, 911, 1048
MaeI CTAG 4 cut(s) 51, 731, 873, 926
MaeII ACGT 1 cut(s) 821
MaeIII GTNAC 4 cut(s) 3, 82, 475, 877
MalI GATC 4 cut(s) 160, 632, 697, 771
MbiI CCGCTC 1 cut(s) 843
MboI GATC 4 cut(s) 158, 630, 695, 769
MboII GAAGA 7 cut(s) 145, 308, 452, 515, 536, 748, 764
MflI RGATCY 2 cut(s) 695, 769
MhlI GDGCHC 3 cut(s) 456, 516, 821
MluCI AATT 4 cut(s) 286, 420, 592, 966
MlyI GAGTC 2 cut(s) 247, 379
MnlI CCTC 9 cut(s) 71, 132, 471, 577, 647, 670, 787, 914, 951
Mph1103I ATGCAT 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 3 cut(s) 41, 203, 540
MslI CAYNNNNRTG 2 cut(s) 689, 802
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 907
MwoI GCNNNNNNNGC 4 cut(s) 127, 162, 398, 422
NcoI CCATGG 1 cut(s) 810
NdeI CATATG 1 cut(s) 427
NdeII GATC 4 cut(s) 158, 630, 695, 769
NlaIV GGNNCC 5 cut(s) 59, 198, 681, 911, 1005
NmuCI GTSAC 3 cut(s) 3, 82, 475
NsiI ATGCAT 1 cut(s) 327
NspI RCATGY 1 cut(s) 894
OliI CACNNNNGTG 1 cut(s) 689
PaqCI CACCTGC 1 cut(s) 68
PciI ACATGT 1 cut(s) 890
PdmI GAANNNNTTC 1 cut(s) 444
PflMI CCANNNNNTGG 1 cut(s) 290
PkrI GCNGC 4 cut(s) 615, 715, 842, 870
PleI GAGTC 2 cut(s) 246, 379
PpsI GAGTC 2 cut(s) 246, 379
PpuMI RGGWCCY 1 cut(s) 679
PscI ACATGT 1 cut(s) 890
Psp5II RGGWCCY 1 cut(s) 679
PspN4I GGNNCC 5 cut(s) 59, 198, 681, 911, 1005
PspPI GGNCC 6 cut(s) 35, 104, 113, 197, 679, 807
PspPPI RGGWCCY 1 cut(s) 679
PstI CTGCAG 2 cut(s) 79, 351
PsuI RGATCY 2 cut(s) 695, 769
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 2 cut(s) 337, 939
RsaNI GTAC 2 cut(s) 336, 938
RseI CAYNNNNRTG 2 cut(s) 689, 802
SaqAI TTAA 3 cut(s) 41, 203, 540
SatI GCNGC 4 cut(s) 614, 714, 841, 869
Sau3AI GATC 4 cut(s) 158, 630, 695, 769
Sau96I GGNCC 6 cut(s) 35, 104, 113, 197, 679, 807
ScaI AGTACT 1 cut(s) 337
SchI GAGTC 2 cut(s) 247, 379
SduI GDGCHC 3 cut(s) 456, 516, 821
SfaNI GCATC 6 cut(s) 339, 376, 739, 856, 911, 1048
SfcI CTRYAG 2 cut(s) 75, 347
SinI GGWCC 3 cut(s) 35, 113, 679
SmiMI CAYNNNNRTG 2 cut(s) 689, 802
SpeI ACTAGT 2 cut(s) 50, 730
Sse9I AATT 4 cut(s) 286, 420, 592, 966
SsiI CCGC 4 cut(s) 70, 235, 841, 868
SspMI CTAG 4 cut(s) 51, 731, 873, 926
StyI CCWWGG 2 cut(s) 810, 925
TaaI ACNGT 4 cut(s) 260, 688, 860, 1036
TaiI ACGT 1 cut(s) 824
TaqI TCGA 4 cut(s) 488, 516, 775, 824
TasI AATT 4 cut(s) 286, 420, 592, 966
TatI WGTACW 1 cut(s) 335
TauI GCSGC 2 cut(s) 843, 871
Tru1I TTAA 3 cut(s) 41, 203, 540
Tru9I TTAA 3 cut(s) 41, 203, 540
TscAI CASTG 3 cut(s) 265, 387, 804
TseFI GTSAC 3 cut(s) 3, 82, 475
TseI GCWGC 2 cut(s) 613, 713
Tsp45I GTSAC 3 cut(s) 3, 82, 475
TspDTI ATGAA 6 cut(s) 444, 453, 461, 905, 946, 1065
TspGWI ACGGA 2 cut(s) 27, 1080
TspRI CASTG 3 cut(s) 265, 387, 804
Van91I CCANNNNNTGG 1 cut(s) 290
VneI GTGCAC 1 cut(s) 817
VpaK11BI GGWCC 3 cut(s) 35, 113, 679
XapI RAATTY 2 cut(s) 286, 966
XceI RCATGY 1 cut(s) 894
XmaJI CCTAGG 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 1081
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 4 cut(s) 51, 731, 873, 926
ZrmI AGTACT 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.