RchiOBHm_Chr2g0118881

N-glycosylase DNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
31149447 .. 31149803
357 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGGATATATCCCTGGCCGAAATTTGGGAGTTTTTTTTGGCTTTCGATTTGAGGTTGGCCAAGCTCGCCACCCATTTGGGTGGTACTAGAGTTCTCAGGCAAGACCCACTTAAGTGTTTGATTCAATTTCTATGTTCTTCGAATAACAACATTCAGAGAATTACCAAAATGGTGGACTTTGTGTCTTCATTGGCGACCCATTTGGGCTCTGTTGGAGGTTTTGAGTTCCTTGAATTTCCATCCTTGGATAGCTTGTCAATGGTGTCAAAACAAGATCTCAGAGAGGCCGGGAGTTGGGTAACCAGATTTAGGTGTACAAATCAGAACTTGATATCGAGAGAGAGAAAGAGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000702 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006282 GO:0006284 GO:0006285 GO:0006289 GO:0006304 GO:0006355 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0008534 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009889 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0016363 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0032356 GO:0032357 GO:0032991 GO:0033554 GO:0033683 GO:0034399 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045007 GO:0045008 GO:0045738 GO:0045934 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051716 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901291 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1903506 GO:2000112 GO:2000779 GO:2000780 GO:2001020 GO:2001021 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD OGG_N

Protein Analysis

118

Amino Acids

13.5

Weight (kDa)

8.59

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 15, 57
AcsI RAATTY 2 cut(s) 21, 233
AfaI GTAC 2 cut(s) 85, 316
AfiI CCNNNNNNNGG 3 cut(s) 24, 294, 309
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 125, 233
AhdI GACNNNNNGTC 1 cut(s) 181
AjnI CCWGG 1 cut(s) 12
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 2 cut(s) 64, 252
AluI AGCT 2 cut(s) 64, 252
AoxI GGCC 3 cut(s) 15, 57, 285
ApoI RAATTY 2 cut(s) 21, 233
AsuC2I CCSGG 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 140
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 177
BccI CCATC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 14
BcnI CCSGG 1 cut(s) 289
BfaI CTAG 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 110
BglII AGATCT 1 cut(s) 274
Bme1390I CCNGG 2 cut(s) 14, 289
BmeRI GACNNNNNGTC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 14, 289
BpiI GAAGAC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 12, 243
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 294, 309
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 12, 243
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 3 cut(s) 24, 294, 309
BseMII CTCAG 2 cut(s) 109, 292
BshFI GGCC 3 cut(s) 17, 59, 287
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 3 cut(s) 24, 294, 309
BsnI GGCC 3 cut(s) 17, 59, 287
Bsp119I TTCGAA 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 314
Bsp143I GATC 1 cut(s) 274
BspANI GGCC 3 cut(s) 17, 59, 287
BspCNI CTCAG 2 cut(s) 108, 291
BspT104I TTCGAA 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 12, 243
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 14
BstAFI CTTAAG 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 95, 278
BstEII GGTNACC 1 cut(s) 298
BstF5I GGATG 1 cut(s) 239
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 14
BstPI GGTNACC 1 cut(s) 298
BstSCI CCNGG 2 cut(s) 12, 287
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 3 cut(s) 76, 80, 172
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 3 cut(s) 17, 59, 287
BtsCI GGATG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 66
Csp6I GTAC 2 cut(s) 84, 315
CviJI RGCY 7 cut(s) 17, 41, 59, 64, 207, 252, 287
CviKI_1 RGCY 7 cut(s) 17, 41, 59, 64, 207, 252, 287
CviQI GTAC 2 cut(s) 84, 315
DdeI CTNAG 2 cut(s) 95, 278
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DriI GACNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 2 cut(s) 15, 57
Eam1105I GACNNNNNGTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 209
Eco32I GATATC 1 cut(s) 333
Eco91I GGTNACC 1 cut(s) 298
EcoO65I GGTNACC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 12
EcoRV GATATC 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 243
FaiI YATR 2 cut(s) 8, 133
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FokI GGATG 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 209
FspBI CTAG 1 cut(s) 87
HaeIII GGCC 3 cut(s) 17, 59, 287
HapII CCGG 1 cut(s) 288
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 288
Hpy166II GTNNAC 2 cut(s) 175, 315
Hpy188I TCNGA 3 cut(s) 156, 281, 324
Hpy188III TCNNGA 1 cut(s) 336
Hpy8I GTNNAC 2 cut(s) 175, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 95, 278
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 4 cut(s) 26, 82, 301, 316
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 2 cut(s) 129, 177
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 4 cut(s) 21, 125, 159, 233
MluNI TGGCCA 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 45, 209, 277
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 2 cut(s) 78, 112
Msp20I TGGCCA 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 110
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 14, 289
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 289
NdeII GATC 1 cut(s) 274
NspV TTCGAA 1 cut(s) 140
OliI CACNNNNGTG 1 cut(s) 112
PfeI GAWTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 298
PspGI CCWGG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 2 cut(s) 85, 316
RsaNI GTAC 2 cut(s) 84, 315
RseI CAYNNNNRTG 2 cut(s) 78, 112
SaqAI TTAA 1 cut(s) 111
Sau3AI GATC 1 cut(s) 274
ScrFI CCNGG 2 cut(s) 14, 289
SduI GDGCHC 1 cut(s) 209
SetI ASST 5 cut(s) 56, 66, 220, 254, 314
SfuI TTCGAA 1 cut(s) 140
SmiMI CAYNNNNRTG 2 cut(s) 78, 112
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 4 cut(s) 21, 125, 159, 233
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 12, 287
StyI CCWWGG 1 cut(s) 243
TaqI TCGA 3 cut(s) 45, 140, 335
TasI AATT 4 cut(s) 21, 125, 159, 233
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 177
Vha464I CTTAAG 1 cut(s) 110
XapI RAATTY 2 cut(s) 21, 233
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.