Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

32225387 .. 32228987

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGACGAGGGATTCGGCGTGTCAGACTTGGATTAGGATGAGAACGGCTAAAACGGTGGAGAGAAAAAGAGAGATTTTGGTCAGTGGCATACGCGTACATCAATCTGAGCATTTTGGTGATTTTTCATTAAAATTGGGAGTCAGGCTTGCATTATTCTGCTTTTGGGCCTGGGCACATGTCCTTATTTGTATAAATATTTTTAAAAGTAAGTTTGCTGTGGTTCCAGTTGGACCGAGATGTTTACACCGGAAAGCCTTACTCAAGGCCTTGGCAGATAAATTAACAATTCATTCAGTTCGTTTCTCTTCTAAGATCTCTGCTATTGATACCCAACAACATGAAGGTTCATCCCTTGCCATTGTTCACTTGGAAAATGGAACTATCATCAAAACAAAGATATCCATGGCATGTGTATTTGGGAACTTAAGCAAGCAAAACGTCACGGTGGCCGGCGATGCCATGCACCCGATGACACCTGATTTAGCACAAGGGGGTGGCTCAGCATTAGAAGATGCCGTGGTCTTAGGCAGACACATAGGGCAATCCTTTGTACAAAATGGACGAGTTCTGGTGCCAAAAGAGATGGCCGTCGCAATTGATAAATATGTACAAGAAAGAAGGTGGCATGTACGTTGCTTTGTTGATTGTGGGATCTTACATATCGGGATGGGTGCAACAAGGAGGGTCTGGCTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

232

Amino Acids

25.79

Weight (kDa)

9.9

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	571
AccII	CGCG	1 cut(s)	93
AclWI	GGATC	1 cut(s)	659
AcoI	YGGCCR	2 cut(s)	447, 585
AfaI	GTAC	4 cut(s)	96, 552, 609, 630
AflII	CTTAAG	1 cut(s)	424
AflIII	ACRYGT	2 cut(s)	91, 175
AjnI	CCWGG	1 cut(s)	167
AlwI	GGATC	1 cut(s)	659
AoxI	GGCC	4 cut(s)	165, 264, 447, 585
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	165, 230
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	571
BccI	CCATC	2 cut(s)	577, 661
BceAI	ACGGC	3 cut(s)	60, 500, 572
BciT130I	CCWGG	1 cut(s)	169
BfrI	CTTAAG	1 cut(s)	424
BglII	AGATCT	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	165, 230
BmiI	GGNNCC	2 cut(s)	222, 573
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	445, 502
Bpu1102I	GCTNAGC	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	4 cut(s)	168, 267, 402, 516
BsaWI	WCCGGW	1 cut(s)	246
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	4 cut(s)	168, 267, 402, 516
BseGI	GGATG	3 cut(s)	42, 347, 672
BseMII	CTCAG	2 cut(s)	96, 513
BseNI	ACTGG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	691
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	4 cut(s)	167, 266, 449, 587
BshNI	GGYRCC	1 cut(s)	571
BsiSI	CCGG	2 cut(s)	247, 450
BsnI	GGCC	4 cut(s)	167, 266, 449, 587
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp1407I	TGTACA	2 cut(s)	550, 607
Bsp143I	GATC	2 cut(s)	312, 651
Bsp1720I	GCTNAGC	1 cut(s)	499
Bsp19I	CCATGG	1 cut(s)	402
BspANI	GGCC	4 cut(s)	167, 266, 449, 587
BspCNI	CTCAG	2 cut(s)	97, 512
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	222, 573
BspPI	GGATC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	571
BspTI	CTTAAG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	449
BsrGI	TGTACA	2 cut(s)	550, 607
BsrI	ACTGG	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	4 cut(s)	168, 267, 402, 516
BssMI	GATC	2 cut(s)	312, 651
BssT1I	CCWWGG	2 cut(s)	267, 402
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	55, 445
Bst6I	CTCTTC	1 cut(s)	310
BstAFI	CTTAAG	1 cut(s)	424
BstAUI	TGTACA	2 cut(s)	550, 607
BstC8I	GCNNGC	3 cut(s)	147, 431, 451
BstDEI	CTNAG	4 cut(s)	105, 309, 499, 523
BstDSI	CCRYGG	2 cut(s)	402, 516
BstF5I	GGATG	3 cut(s)	42, 347, 672
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	315, 654
BstMBI	GATC	2 cut(s)	312, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	3 cut(s)	179, 411, 629
BstSCI	CCNGG	1 cut(s)	167
BstSLI	GKGCMC	1 cut(s)	175
BstUI	CGCG	1 cut(s)	93
BstX2I	RGATCY	2 cut(s)	312, 651
BstYI	RGATCY	2 cut(s)	312, 651
BsuRI	GGCC	4 cut(s)	167, 266, 449, 587
BtgI	CCRYGG	2 cut(s)	402, 516
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	42, 347, 672
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	3 cut(s)	147, 431, 451
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	2 cut(s)	165, 230
Csp6I	GTAC	4 cut(s)	95, 551, 608, 629
CviAII	CATG	6 cut(s)	176, 338, 403, 408, 460, 626
CviJI	RGCY	9 cut(s)	47, 145, 167, 254, 266, 449, 498, 587, 691
CviKI_1	RGCY	9 cut(s)	47, 145, 167, 254, 266, 449, 498, 587, 691
CviQI	GTAC	4 cut(s)	95, 551, 608, 629
DdeI	CTNAG	4 cut(s)	105, 309, 499, 523
DpnI	GATC	2 cut(s)	314, 653
DpnII	GATC	2 cut(s)	312, 651
DraI	TTTAAA	1 cut(s)	202
EaeI	YGGCCR	2 cut(s)	447, 585
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	267, 402
Eco147I	AGGCCT	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	267, 402
ErhI	CCWWGG	2 cut(s)	267, 402
FaeI	CATG	6 cut(s)	179, 341, 406, 411, 463, 629
FatI	CATG	6 cut(s)	175, 337, 402, 407, 459, 625
FokI	GGATG	3 cut(s)	49, 334, 679
GsaI	CCCAGC	1 cut(s)	695
HaeIII	GGCC	4 cut(s)	167, 266, 449, 587
HapII	CCGG	2 cut(s)	247, 450
Hin1II	CATG	6 cut(s)	179, 341, 406, 411, 463, 629
HinfI	GANTC	2 cut(s)	11, 138
HpaII	CCGG	2 cut(s)	247, 450
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	242, 364
Hpy188I	TCNGA	2 cut(s)	24, 106
Hpy188III	TCNNGA	1 cut(s)	664
Hpy8I	GTNNAC	2 cut(s)	242, 364
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	335, 612
HpyCH4III	ACNGT	2 cut(s)	55, 445
HpyCH4IV	ACGT	2 cut(s)	438, 631
HpyCH4V	TGCA	3 cut(s)	149, 463, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	4 cut(s)	105, 309, 499, 523
HpySE526I	ACGT	2 cut(s)	438, 631
Hsp92II	CATG	6 cut(s)	179, 341, 406, 411, 463, 629
KroI	GCCGGC	1 cut(s)	449
KroNI	GCCGGC	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	312, 651
LweI	GCATC	2 cut(s)	445, 502
MaeII	ACGT	2 cut(s)	438, 631
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	314, 653
MboI	GATC	2 cut(s)	312, 651
MboII	GAAGA	2 cut(s)	297, 521
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	2 cut(s)	312, 651
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	4 cut(s)	131, 278, 285, 594
MluI	ACGCGT	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	1 cut(s)	675
MroNI	GCCGGC	1 cut(s)	449
MseI	TTAA	4 cut(s)	128, 201, 281, 425
MslI	CAYNNNNRTG	1 cut(s)	114
MspCI	CTTAAG	1 cut(s)	424
MspI	CCGG	2 cut(s)	247, 450
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	455
NaeI	GCCGGC	1 cut(s)	451
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	2 cut(s)	312, 651
NgoMIV	GCCGGC	1 cut(s)	449
NlaIII	CATG	6 cut(s)	179, 341, 406, 411, 463, 629
NlaIV	GGNNCC	2 cut(s)	222, 573
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	3 cut(s)	179, 411, 629
PceI	AGGCCT	1 cut(s)	266
PciI	ACATGT	1 cut(s)	175
PdiI	GCCGGC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PscI	ACATGT	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	222, 573
PspPI	GGNCC	2 cut(s)	165, 230
PsuI	RGATCY	2 cut(s)	312, 651
RsaI	GTAC	4 cut(s)	96, 552, 609, 630
RsaNI	GTAC	4 cut(s)	95, 551, 608, 629
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	4 cut(s)	128, 201, 281, 425
Sau3AI	GATC	2 cut(s)	312, 651
Sau96I	GGNCC	2 cut(s)	165, 230
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	5 cut(s)	346, 441, 478, 623, 634
SfaNI	GCATC	2 cut(s)	445, 502
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	260, 424
SmoI	CTYRAG	2 cut(s)	260, 424
Sse9I	AATT	4 cut(s)	131, 278, 285, 594
SseBI	AGGCCT	1 cut(s)	266
SspI	AATATT	1 cut(s)	196
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	267, 402
TaaI	ACNGT	2 cut(s)	55, 445
TaiI	ACGT	2 cut(s)	441, 634
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	4 cut(s)	131, 278, 285, 594
TatI	WGTACW	2 cut(s)	550, 607
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	4 cut(s)	128, 201, 281, 425
Tru9I	TTAA	4 cut(s)	128, 201, 281, 425
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	114, 278, 336, 354
TspRI	CASTG	1 cut(s)	88
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	230
XceI	RCATGY	3 cut(s)	179, 411, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.