RchiOBHm_Chr2g0120481

Mitochondrial biogenesis AIM24

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0027993
Physical Location & Seq
Reverse (-)
33158540 .. 33163944
5405 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGGCTGCACCGTTTTTCTCAACGCCGTTTCAGCCCTACGTGTACCAGAGTCCACAAGATGCTATGATACCGTTTCAAATTCTGGGTGGTGAAGCTCAATTGGTGCAGATAATGTTGAAGCCGGAAGAAAAGGTTATAGCAAAGCCTGGTTCAATGTGCTTCATATCCGGGTCGATCGAAATGGAAAATGTTTTTGTTCCTGAAAATGAAGTAGGGGTGTGGCAGTGGCTTTTTGGCAAGACAGTGAGTAGCATAGTTTTTCACAATAACGGTCAAGGCGATGGGTTTGTTGGAATTGTTGCACCTTCTCTGGCCAGAATTCTCCCGATTGATTTGGCAATGTTTGGCGGAGAGATTTTGTGCCAGCCAGATGCATTCCTTTGTTCCGTTAATGATGTTAAAGTCAGTAATACCGTTGACCAAAGGGCTCGTAATATTATTCCTGGTGCAGAGGGTTTTGTAAGACAGAAGTTATCTGGCCAAGGGCTTGCATTTATAATTGCAGGTGGATCTGATATGTCATTGCTTTCTTCATTTTTGCTAGTTGTACAGAAAAATCTTGATGCGGGCGAGGTACTATCTGTTGATGTTTCTTGTATAGCAGCTGTGACTGCAACAGTCAACATCCAAATCAAATACAATGGGCCCATGAGAAGAGCAGTGTTTGGTGAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIM24

Protein Analysis

225

Amino Acids

24.22

Weight (kDa)

4.77

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIM24 PF01987 25 - 223 2.2e-37 Mitochondrial biogenesis AIM24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027993)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19370
rosa_chinensis RchiOBHm_Chr2g0120481

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AarI CACCTGC 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 494
AciI CCGC 2 cut(s) 348, 566
AclWI GGATC 1 cut(s) 517
AcoI YGGCCR 2 cut(s) 312, 478
AcsI RAATTY 2 cut(s) 78, 318
AfaI GTAC 3 cut(s) 44, 549, 576
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 3 cut(s) 77, 118, 153
AjnI CCWGG 2 cut(s) 145, 442
AluBI AGCT 2 cut(s) 95, 605
AluI AGCT 2 cut(s) 95, 605
AlwI GGATC 1 cut(s) 517
AoxI GGCC 3 cut(s) 312, 478, 644
ApaI GGGCCC 1 cut(s) 648
ApeKI GCWGC 2 cut(s) 5, 602
ApoI RAATTY 2 cut(s) 78, 318
AspS9I GGNCC 2 cut(s) 644, 645
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 648
BalI TGGCCA 2 cut(s) 314, 480
BanII GRGCYC 2 cut(s) 430, 648
BbvI GCAGC 1 cut(s) 614
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 2 cut(s) 147, 444
BcnI CCSGG 1 cut(s) 169
BfaI CTAG 2 cut(s) 542, 676
BfuAI ACCTGC 1 cut(s) 494
BisI GCNGC 2 cut(s) 6, 603
BlsI GCNGC 2 cut(s) 7, 604
Bme1390I CCNGG 3 cut(s) 147, 169, 444
BmgT120I GGNCC 2 cut(s) 644, 645
BmiI GGNNCC 1 cut(s) 646
BmrFI CCNGG 3 cut(s) 147, 169, 444
BmsI GCATC 3 cut(s) 49, 361, 553
BpuMI CCSGG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 481
Bse3DI GCAATG 2 cut(s) 345, 521
BseBI CCWGG 2 cut(s) 147, 444
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 1 cut(s) 624
BseMI GCAATG 2 cut(s) 345, 521
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 1 cut(s) 614
BsgI GTGCAG 2 cut(s) 125, 468
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 314, 480, 646
BsiEI CGRYCG 1 cut(s) 177
BsiSI CCGG 2 cut(s) 122, 168
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 3 cut(s) 314, 480, 646
Bsp120I GGGCCC 1 cut(s) 644
Bsp1286I GDGCHC 2 cut(s) 430, 648
Bsp1407I TGTACA 1 cut(s) 547
Bsp143I GATC 2 cut(s) 174, 509
BspACI CCGC 2 cut(s) 348, 566
BspANI GGCC 3 cut(s) 314, 480, 646
BspLI GGNNCC 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 649
BsrDI GCAATG 2 cut(s) 345, 521
BsrGI TGTACA 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 174, 509
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 147, 444
Bst4CI ACNGT 6 cut(s) 12, 72, 244, 272, 415, 619
Bst6I CTCTTC 1 cut(s) 649
BstAUI TGTACA 1 cut(s) 547
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 3 cut(s) 365, 489, 568
BstF5I GGATG 1 cut(s) 624
BstKTI GATC 2 cut(s) 177, 512
BstMBI GATC 2 cut(s) 174, 509
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 31, 611
BstNI CCWGG 2 cut(s) 147, 444
BstSCI CCNGG 3 cut(s) 145, 167, 442
BstSLI GKGCMC 1 cut(s) 648
BstV1I GCAGC 1 cut(s) 614
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BsuRI GGCC 3 cut(s) 314, 480, 646
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 624
BtsI GCAGTG 2 cut(s) 230, 666
BtsIMutI CAGTG 3 cut(s) 230, 249, 666
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 3 cut(s) 365, 489, 568
Cfr13I GGNCC 2 cut(s) 644, 645
Csp6I GTAC 3 cut(s) 43, 548, 575
CviAII CATG 1 cut(s) 649
CviQI GTAC 3 cut(s) 43, 548, 575
DpnI GATC 2 cut(s) 176, 511
DpnII GATC 2 cut(s) 174, 509
EaeI YGGCCR 2 cut(s) 312, 478
Eam1104I CTCTTC 1 cut(s) 649
EarI CTCTTC 1 cut(s) 649
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 2 cut(s) 430, 648
EcoRI GAATTC 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 145, 442
EcoT14I CCWWGG 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 2 cut(s) 430, 648
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 1 cut(s) 652
FaiI YATR 8 cut(s) 65, 137, 164, 254, 497, 518, 599, 650
FatI CATG 1 cut(s) 648
FauI CCCGC 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 6, 603
FokI GGATG 1 cut(s) 611
FriOI GRGCYC 2 cut(s) 430, 648
Fsp4HI GCNGC 2 cut(s) 6, 603
FspBI CTAG 2 cut(s) 542, 676
GluI GCNGC 2 cut(s) 6, 603
HaeIII GGCC 3 cut(s) 314, 480, 646
HapII CCGG 2 cut(s) 122, 168
Hin1II CATG 1 cut(s) 652
HincII GTYRAC 2 cut(s) 418, 622
HindII GTYRAC 2 cut(s) 418, 622
HinfI GANTC 1 cut(s) 49
HpaII CCGG 2 cut(s) 122, 168
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 4 cut(s) 43, 53, 418, 622
Hpy188I TCNGA 1 cut(s) 514
Hpy188III TCNNGA 3 cut(s) 200, 325, 560
Hpy8I GTNNAC 4 cut(s) 43, 53, 418, 622
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 6 cut(s) 12, 72, 244, 272, 415, 619
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 8 cut(s) 8, 106, 302, 374, 449, 491, 503, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 611
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 652
Kzo9I GATC 2 cut(s) 174, 509
LguI GCTCTTC 1 cut(s) 649
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 3 cut(s) 49, 361, 553
MaeI CTAG 2 cut(s) 542, 676
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 607
MalI GATC 2 cut(s) 176, 511
MboI GATC 2 cut(s) 174, 509
MboII GAAGA 3 cut(s) 137, 522, 666
MfeI CAATTG 1 cut(s) 98
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 2 cut(s) 430, 648
MlsI TGGCCA 2 cut(s) 314, 480
MluCI AATT 5 cut(s) 78, 98, 294, 318, 498
MluNI TGGCCA 2 cut(s) 314, 480
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 2 cut(s) 445, 565
Mox20I TGGCCA 2 cut(s) 314, 480
Mph1103I ATGCAT 1 cut(s) 376
MscI TGGCCA 2 cut(s) 314, 480
MseI TTAA 2 cut(s) 390, 399
Msp20I TGGCCA 2 cut(s) 314, 480
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 2 cut(s) 122, 168
MspR9I CCNGG 3 cut(s) 147, 169, 444
MunI CAATTG 1 cut(s) 98
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 2 cut(s) 147, 444
MwoI GCNNNNNNNGC 2 cut(s) 31, 611
NciI CCSGG 1 cut(s) 169
NdeII GATC 2 cut(s) 174, 509
NlaIII CATG 1 cut(s) 652
NlaIV GGNNCC 1 cut(s) 646
NmuCI GTSAC 1 cut(s) 607
NsiI ATGCAT 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 494
PciSI GCTCTTC 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 7, 604
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 40
PsiI TTATAA 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 145, 442
PspGI CCWGG 2 cut(s) 145, 442
PspN4I GGNNCC 1 cut(s) 646
PspOMI GGGCCC 1 cut(s) 644
PspPI GGNCC 2 cut(s) 644, 645
PsuI RGATCY 1 cut(s) 509
PvuI CGATCG 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 3 cut(s) 44, 549, 576
RsaNI GTAC 3 cut(s) 43, 548, 575
SapI GCTCTTC 1 cut(s) 649
SaqAI TTAA 2 cut(s) 390, 399
SatI GCNGC 2 cut(s) 6, 603
Sau3AI GATC 2 cut(s) 174, 509
Sau96I GGNCC 2 cut(s) 644, 645
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 3 cut(s) 147, 169, 444
SduI GDGCHC 2 cut(s) 430, 648
SetI ASST 7 cut(s) 42, 97, 135, 307, 508, 576, 607
SfaNI GCATC 3 cut(s) 49, 361, 553
Sse9I AATT 5 cut(s) 78, 98, 294, 318, 498
SsiI CCGC 2 cut(s) 348, 566
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 542, 676
StyD4I CCNGG 3 cut(s) 145, 167, 442
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 6 cut(s) 12, 72, 244, 272, 415, 619
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 173, 177
TasI AATT 5 cut(s) 78, 98, 294, 318, 498
TatI WGTACW 1 cut(s) 547
Tru1I TTAA 2 cut(s) 390, 399
Tru9I TTAA 2 cut(s) 390, 399
TscAI CASTG 3 cut(s) 230, 249, 666
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 2 cut(s) 5, 602
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 3 cut(s) 151, 222, 522
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 3 cut(s) 230, 249, 666
XapI RAATTY 2 cut(s) 78, 318
XspI CTAG 2 cut(s) 542, 676
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.