RchiOBHm_Chr2g0120491

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
33167198 .. 33168054
857 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGGACATGCCATTTGGGGGTCCTTTCCCACAGGACTCATTTGGTGGTCAAGGTTATATGATGCCTATGGTTCCACCTCAGAGGGATCTCGCGGACTTTGGTATGGGTATGGGAATGAAAGGAATGAATGTTGGACCTCCTCCTATCATGAGCAGAGAGGAATTTGAGGCTCGGAAAGCTGATTTGAGGAGGAAGCGTGAAAATGAGAGACGGGGCCAAAGGGAGTTCTCCAAAGATCGGGAATATGGAAGGGATGCGAGTGGTGATGGCGATGTGCCTCCAATGAAGTCCAAATCAGCGCCGTCTTTATTTGTGCCAATTTCCCTCTCTTCTTATCATTTGTATACTGCTGCAGCAGGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

121

Amino Acids

13.45

Weight (kDa)

9.04

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 344
AccII CGCG 1 cut(s) 92
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 17, 237
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 1 cut(s) 93
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 350, 353
ApoI RAATTY 1 cut(s) 161
ArsI GACNNNNNNTTYG 1 cut(s) 28
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 3 cut(s) 20, 134, 214
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 2 cut(s) 20, 134
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 347
BisI GCNGC 2 cut(s) 351, 354
BlsI GCNGC 2 cut(s) 352, 355
Bme18I GGWCC 2 cut(s) 20, 134
BmgT120I GGNCC 3 cut(s) 20, 134, 214
BmiI GGNNCC 3 cut(s) 21, 72, 215
BmsI GCATC 2 cut(s) 51, 244
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 237
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 17, 237
BseMII CTCAG 1 cut(s) 92
BseRI GAGGAG 2 cut(s) 129, 202
BseXI GCAGC 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 216
BslI CCNNNNNNNGG 2 cut(s) 17, 237
BsmAI GTCTC 1 cut(s) 202
BsmBI CGTCTC 1 cut(s) 202
BsnI GGCC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 85, 235
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 91
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 21, 72, 215
BspMAI CTGCAG 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 347
BspPI GGATC 1 cut(s) 93
BssMI GATC 2 cut(s) 85, 235
BssNAI GTATAC 1 cut(s) 345
Bst1107I GTATAC 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 334
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 2 cut(s) 88, 238
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 85, 235
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 347
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 3 cut(s) 20, 134, 214
CviAII CATG 2 cut(s) 7, 148
CviJI RGCY 3 cut(s) 170, 179, 216
CviKI_1 RGCY 3 cut(s) 170, 179, 216
DdeI CTNAG 1 cut(s) 78
DpnI GATC 2 cut(s) 87, 237
DpnII GATC 2 cut(s) 85, 235
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 20, 134
EcoO109I RGGNCCY 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 2 cut(s) 10, 151
FaiI YATR 9 cut(s) 8, 57, 59, 68, 104, 110, 149, 246, 345
FatI CATG 2 cut(s) 6, 147
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 2 cut(s) 351, 354
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 351, 354
GlaI GCGC 1 cut(s) 300
GluI GCNGC 2 cut(s) 351, 354
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 1 cut(s) 216
HhaI GCGC 1 cut(s) 301
Hin1II CATG 2 cut(s) 10, 151
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 2 cut(s) 81, 174
Hpy188III TCNNGA 2 cut(s) 148, 239
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 2 cut(s) 10, 151
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 2 cut(s) 85, 235
LpnPI CCDG 2 cut(s) 17, 342
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 2 cut(s) 51, 244
MalI GATC 2 cut(s) 87, 237
MboI GATC 2 cut(s) 85, 235
MboII GAAGA 1 cut(s) 321
MflI RGATCY 1 cut(s) 85
MluCI AATT 2 cut(s) 161, 318
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 112
MseI TTAA 1 cut(s) 364
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 2 cut(s) 85, 235
NlaIII CATG 2 cut(s) 10, 151
NlaIV GGNNCC 3 cut(s) 21, 72, 215
NspI RCATGY 1 cut(s) 10
PagI TCATGA 1 cut(s) 147
PkrI GCNGC 2 cut(s) 352, 355
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PpuMI RGGWCCY 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 20
PspN4I GGNNCC 3 cut(s) 21, 72, 215
PspPI GGNCC 3 cut(s) 20, 134, 214
PspPPI RGGWCCY 1 cut(s) 20
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 85
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 2 cut(s) 351, 354
Sau3AI GATC 2 cut(s) 85, 235
Sau96I GGNCC 3 cut(s) 20, 134, 214
SchI GAGTC 1 cut(s) 29
SetI ASST 5 cut(s) 55, 79, 139, 181, 361
SfaNI GCATC 2 cut(s) 51, 244
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 2 cut(s) 20, 134
Sse9I AATT 2 cut(s) 161, 318
SsiI CCGC 1 cut(s) 92
TasI AATT 2 cut(s) 161, 318
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TseI GCWGC 2 cut(s) 350, 353
TspDTI ATGAA 3 cut(s) 131, 140, 299
VpaK11BI GGWCC 2 cut(s) 20, 134
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.