RchiOBHm_Chr2g0121561

Domain of unknown function (DUF4602)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
34469305 .. 34472495
3191 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGTCCAACCAGTTCAAAAAAATGCACAAGAACAAGGGAGGCGACAGAGGGAGACAAATGGGTAGGAAGAACCAGAAGCCGGAAACCAAGGACCAAGAATTGGACTCCAACGACCTAAGAATGGACATGAGGGAGATTTCCAAGCGTATTGAGCTCTTGGGTATGTCTAATTCACTCTTTCTTTTCACATTCCATGAAATTCTTTTGTTTCTACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.56

Weight (kDa)

9.77

Isoelectric Point (pI)

68.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AcsI RAATTY 1 cut(s) 198
AfiI CCNNNNNNNGG 3 cut(s) 79, 100, 121
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 91
AvaII GGWCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 100, 121
Bse1I ACTGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 79, 100, 121
BseNI ACTGG 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 3 cut(s) 79, 100, 121
BsmAI GTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 116
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 91
CviAII CATG 2 cut(s) 127, 194
CviJI RGCY 2 cut(s) 79, 154
CviKI_1 RGCY 2 cut(s) 79, 154
DdeI CTNAG 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 130, 197
FaiI YATR 4 cut(s) 128, 164, 195, 217
FatI CATG 2 cut(s) 126, 193
FriOI GRGCYC 1 cut(s) 156
HapII CCGG 1 cut(s) 80
Hin1II CATG 2 cut(s) 130, 197
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 2 cut(s) 130, 197
LpnPI CCDG 3 cut(s) 23, 86, 93
MboII GAAGA 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 3 cut(s) 98, 169, 198
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 30, 132
MnlI CCTC 3 cut(s) 32, 41, 123
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 151
NlaIII CATG 2 cut(s) 130, 197
PflMI CCANNNNNTGG 1 cut(s) 100
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 156
SetI ASST 2 cut(s) 117, 156
SinI GGWCC 1 cut(s) 91
Sse9I AATT 3 cut(s) 98, 169, 198
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 87
TasI AATT 3 cut(s) 98, 169, 198
TspDTI ATGAA 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.