RchiOBHm_Chr2g0121661

SAL1 phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
34592489 .. 34596139
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
ATGCGTTTACACTCCGATTCGGGAGATCTTCGAATAGACAGTGGCAGGGAAACACTAGAACGCATCACAAAACTTGTTAACGATACTCTTGCCAACAGTGACAGTTATATTGATTCTAATTTGACCACTGAAGATGTGCTCAGGGCTATTGACAATGGCAAATCTGAAGGTGGTTCTTGTGGCCGGCACTGGGTTTTAGATCCCATTGACGGTACCAAAGGACATCATTGGGGCTTTTATATTAAGGAGCTTTTTCAATGTGATCTCAAGCACTCATGCTTTTTATGTGATCTCCAGTTAAATAATCGTTTGGTTTCATTACAAGGATGTCAATCCTCTATATGGAAGAGTTTAGTACATATTTATTGTGTTTCTATGTTTGTTAGAGGAGACCAATATGCCATAGCATTAGCATTACTGGATGAAGGAAAAGTTGTGTTGGGTGTCCTGGCTTGTCCAAATCTCCCCCTGGCGAACATATATGCAGCCATTGGATGGTTCATCATCGCTAAAGTGTATGTCAGTGCTACTGAAAATCCTGAAGACGCCTCATTCTTTGAGTCTTATGAAGCAGCACACTCCTTGCACGTCTTGTCTAGCACCATTGCCAAGAAACTTGGAGTCAAAGCACCGCTAGTTAGAATTGACAGCCAGGCAAAGTATGGGGCACTTTCCAGAGGAGATGGAGCAATATATCTTCGTTTCCCCCATAAAGGATATCGCGAGAAAATATGGGATCATGCTGCTGGGTGCATTGTTGTCACTGAAGCTGGTGGTGTAGTCACAGATGCTGCCGGAAATCCATTGGACATTTCAAAAGGGAGCTATCTGGATCTTGAAACAGGCATATATAATTGTTACCAACCAGAAATTGATGCCATCACTCTTGAAGGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko00920 ko01100 ko01120 ko04070 map00562 map00920 map01100 map01120 map04070
Pfam Domains
Protein Families
Inositol_P

Protein Analysis

299

Amino Acids

32.76

Weight (kDa)

5.44

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 14 - 74 3.6e-06 Inositol monophosphatase family
Inositol_P PF00459 127 - 276 9.1e-27 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AccB7I CCANNNNNTGG 1 cut(s) 495
AccII CGCG 1 cut(s) 723
AciI CCGC 1 cut(s) 632
AclWI GGATC 3 cut(s) 194, 744, 840
AcoI YGGCCR 1 cut(s) 181
AcuI CTGAAG 4 cut(s) 150, 186, 561, 786
AcyI GRCGYC 1 cut(s) 546
AfaI GTAC 2 cut(s) 214, 357
AfiI CCNNNNNNNGG 5 cut(s) 190, 209, 342, 495, 713
AgsI TTSAA 4 cut(s) 257, 816, 839, 890
AjiI CACGTC 1 cut(s) 589
AjnI CCWGG 3 cut(s) 447, 468, 651
AluBI AGCT 3 cut(s) 250, 770, 825
AluI AGCT 3 cut(s) 250, 770, 825
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 3 cut(s) 194, 744, 840
AlwNI CAGNNNCTG 1 cut(s) 791
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 4 cut(s) 485, 572, 743, 791
Asp718I GGTACC 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 670
BanI GGYRCC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 4 cut(s) 497, 584, 730, 778
BccI CCATC 3 cut(s) 489, 677, 887
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 3 cut(s) 449, 470, 653
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 3 cut(s) 56, 597, 635
BglII AGATCT 1 cut(s) 25
BisI GCNGC 4 cut(s) 486, 573, 744, 792
BlsI GCNGC 4 cut(s) 487, 574, 745, 793
Bme1390I CCNGG 3 cut(s) 449, 470, 653
BmgBI CACGTC 1 cut(s) 589
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 3 cut(s) 449, 470, 653
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 3 cut(s) 72, 778, 865
BmuI ACTGGG 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 549
BpmI CTGGAG 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 209, 342, 495, 713
Bse118I RCCGGY 1 cut(s) 183
Bse1I ACTGG 3 cut(s) 194, 295, 423
Bse3DI GCAATG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 331
BseBI CCWGG 3 cut(s) 449, 470, 653
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 3 cut(s) 332, 427, 500
BseJI GATNNNNATC 1 cut(s) 331
BseLI CCNNNNNNNGG 5 cut(s) 190, 209, 342, 495, 713
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 3 cut(s) 194, 295, 423
BseRI GAGGAG 2 cut(s) 402, 693
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 4 cut(s) 497, 584, 730, 778
BseYI CCCAGC 1 cut(s) 746
Bsh1236I CGCG 1 cut(s) 723
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 2 cut(s) 184, 795
BslI CCNNNNNNNGG 5 cut(s) 190, 209, 342, 495, 713
BsmAI GTCTC 1 cut(s) 384
BsnI GGCC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 31
Bsp1286I GDGCHC 2 cut(s) 141, 670
Bsp143I GATC 6 cut(s) 25, 199, 262, 289, 736, 832
Bsp68I TCGCGA 1 cut(s) 723
BspACI CCGC 1 cut(s) 632
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 723
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 3 cut(s) 194, 744, 840
BspT104I TTCGAA 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 603
BsrFI RCCGGY 1 cut(s) 183
BsrI ACTGG 3 cut(s) 194, 295, 423
BssAI RCCGGY 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 6 cut(s) 25, 199, 262, 289, 736, 832
BssNI GRCGYC 1 cut(s) 546
Bst2UI CCWGG 3 cut(s) 449, 470, 653
Bst4CI ACNGT 4 cut(s) 41, 98, 104, 212
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 546
BstBI TTCGAA 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 3 cut(s) 332, 427, 500
BstFNI CGCG 1 cut(s) 723
BstKTI GATC 6 cut(s) 28, 202, 265, 292, 739, 835
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 6 cut(s) 25, 199, 262, 289, 736, 832
BstNI CCWGG 3 cut(s) 449, 470, 653
BstSCI CCNGG 3 cut(s) 447, 468, 651
BstSLI GKGCMC 1 cut(s) 670
BstUI CGCG 1 cut(s) 723
BstV1I GCAGC 4 cut(s) 497, 584, 730, 778
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 3 cut(s) 25, 199, 832
BstYI RGATCY 3 cut(s) 25, 199, 832
BsuRI GGCC 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 490
BtrI CACGTC 1 cut(s) 589
BtsCI GGATG 3 cut(s) 332, 427, 500
BtsIMutI CAGTG 6 cut(s) 46, 103, 126, 187, 529, 762
BtuMI TCGCGA 1 cut(s) 723
Cac8I GCNNGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 791
Cfr10I RCCGGY 1 cut(s) 183
CseI GACGC 1 cut(s) 554
Csp6I GTAC 2 cut(s) 213, 356
CviAII CATG 2 cut(s) 276, 740
CviJI RGCY 9 cut(s) 146, 183, 234, 250, 452, 488, 651, 770, 825
CviKI_1 RGCY 9 cut(s) 146, 183, 234, 250, 452, 488, 651, 770, 825
CviQI GTAC 2 cut(s) 213, 356
DdeI CTNAG 1 cut(s) 140
DpnI GATC 6 cut(s) 27, 201, 264, 291, 738, 834
DpnII GATC 6 cut(s) 25, 199, 262, 289, 736, 832
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 384
Eco32I GATATC 1 cut(s) 719
Eco57I CTGAAG 4 cut(s) 150, 186, 561, 786
EcoRII CCWGG 3 cut(s) 447, 468, 651
EcoRV GATATC 1 cut(s) 719
FaeI CATG 2 cut(s) 279, 743
FatI CATG 2 cut(s) 275, 739
Fnu4HI GCNGC 4 cut(s) 486, 573, 744, 792
FokI GGATG 3 cut(s) 339, 434, 507
Fsp4HI GCNGC 4 cut(s) 486, 573, 744, 792
FspBI CTAG 3 cut(s) 56, 597, 635
GluI GCNGC 4 cut(s) 486, 573, 744, 792
GsaI CCCAGC 1 cut(s) 750
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 1 cut(s) 183
HapII CCGG 2 cut(s) 184, 795
HgaI GACGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 546
Hin1II CATG 2 cut(s) 279, 743
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 4 cut(s) 17, 113, 560, 621
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 2 cut(s) 184, 795
Hpy166II GTNNAC 2 cut(s) 8, 79
Hpy188I TCNGA 2 cut(s) 16, 166
Hpy188III TCNNGA 7 cut(s) 21, 539, 675, 722, 830, 836, 887
Hpy8I GTNNAC 2 cut(s) 8, 79
HpyAV CCTTC 3 cut(s) 161, 419, 884
HpyCH4III ACNGT 4 cut(s) 41, 98, 104, 212
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 3 cut(s) 485, 586, 753
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 588
Hsp92I GRCGYC 1 cut(s) 546
Hsp92II CATG 2 cut(s) 279, 743
KpnI GGTACC 1 cut(s) 216
KroI GCCGGC 1 cut(s) 183
KroNI GCCGGC 1 cut(s) 185
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 6 cut(s) 25, 199, 262, 289, 736, 832
LmnI GCTCC 3 cut(s) 247, 686, 822
Lsp1109I GCAGC 4 cut(s) 497, 584, 730, 778
LweI GCATC 3 cut(s) 72, 778, 865
MaeI CTAG 3 cut(s) 56, 597, 635
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 4 cut(s) 98, 760, 781, 857
MalI GATC 6 cut(s) 27, 201, 264, 291, 738, 834
MboI GATC 6 cut(s) 25, 199, 262, 289, 736, 832
MboII GAAGA 5 cut(s) 20, 143, 358, 554, 689
MflI RGATCY 3 cut(s) 25, 199, 832
MhlI GDGCHC 2 cut(s) 141, 670
MluCI AATT 4 cut(s) 118, 642, 853, 870
MlyI GAGTC 2 cut(s) 569, 630
MnlI CCTC 4 cut(s) 346, 380, 559, 671
MroNI GCCGGC 1 cut(s) 183
MseI TTAA 4 cut(s) 78, 243, 299, 898
MspI CCGG 2 cut(s) 184, 795
MspR9I CCNGG 3 cut(s) 449, 470, 653
MvaI CCWGG 3 cut(s) 449, 470, 653
MvnI CGCG 1 cut(s) 723
NaeI GCCGGC 1 cut(s) 185
NdeII GATC 6 cut(s) 25, 199, 262, 289, 736, 832
NgoMIV GCCGGC 1 cut(s) 183
NlaIII CATG 2 cut(s) 279, 743
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 3 cut(s) 98, 760, 781
NruI TCGCGA 1 cut(s) 723
NspV TTCGAA 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 17, 113
PflMI CCANNNNNTGG 1 cut(s) 495
PkrI GCNGC 4 cut(s) 487, 574, 745, 793
PleI GAGTC 2 cut(s) 568, 629
PpsI GAGTC 2 cut(s) 568, 629
Psp6I CCWGG 3 cut(s) 447, 468, 651
PspFI CCCAGC 1 cut(s) 746
PspGI CCWGG 3 cut(s) 447, 468, 651
PspN4I GGNNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 791
PsuI RGATCY 3 cut(s) 25, 199, 832
RruI TCGCGA 1 cut(s) 723
RsaI GTAC 2 cut(s) 214, 357
RsaNI GTAC 2 cut(s) 213, 356
SaqAI TTAA 4 cut(s) 78, 243, 299, 898
SatI GCNGC 4 cut(s) 486, 573, 744, 792
Sau3AI GATC 6 cut(s) 25, 199, 262, 289, 736, 832
SchI GAGTC 2 cut(s) 569, 630
ScrFI CCNGG 3 cut(s) 449, 470, 653
SduI GDGCHC 2 cut(s) 141, 670
SetI ASST 5 cut(s) 172, 252, 591, 772, 827
SfaNI GCATC 3 cut(s) 72, 778, 865
SfuI TTCGAA 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 4 cut(s) 118, 642, 853, 870
SsiI CCGC 1 cut(s) 632
SspMI CTAG 3 cut(s) 56, 597, 635
StyD4I CCNGG 3 cut(s) 447, 468, 651
TaaI ACNGT 4 cut(s) 41, 98, 104, 212
TaiI ACGT 1 cut(s) 591
TaqI TCGA 1 cut(s) 31
TasI AATT 4 cut(s) 118, 642, 853, 870
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 2 cut(s) 17, 113
Tru1I TTAA 4 cut(s) 78, 243, 299, 898
Tru9I TTAA 4 cut(s) 78, 243, 299, 898
TscAI CASTG 6 cut(s) 46, 103, 133, 194, 529, 769
TseFI GTSAC 3 cut(s) 98, 760, 781
TseI GCWGC 4 cut(s) 485, 572, 743, 791
Tsp45I GTSAC 3 cut(s) 98, 760, 781
TspDTI ATGAA 4 cut(s) 306, 438, 490, 582
TspRI CASTG 6 cut(s) 46, 103, 133, 194, 529, 769
Van91I CCANNNNNTGG 1 cut(s) 495
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XspI CTAG 3 cut(s) 56, 597, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.