Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

34598069 .. 34598486

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCAGTACAGGGAGCCAGGAGTTTTAATATGGCGTGGTTTCACTGTACAAGAATTTGCAAACCAGTGTTTCAGTAACAAAGCTGATTACGGGAAAGGCAGGCAGTTGCCAATCCATTATGGGTCTAACAAGCACAATTACGTCACTGTAGCATCAACCGCTGTTGGTGTTGCTTATTCTCTAAAAATGGACAGAAAAGATGCATGTGTGGTCACATATGTTGGTGATGGTGGCACAAGCGAGATGAAGTACAAGATACTAATATATTTTAACCTAAAACTACCTGCACCTCTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

99

Amino Acids

11.18

Weight (kDa)

9.3

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	1 - 81	1.2e-11	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AciI	CCGC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	3 cut(s)	8, 48, 251
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	236
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	161, 190
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	270
Bsp1407I	TGTACA	1 cut(s)	46
BspACI	CCGC	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	46, 148
BstAUI	TGTACA	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	147
BtsIMutI	CAGTG	3 cut(s)	42, 71, 144
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	7, 47, 250
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	2 cut(s)	16, 83
CviKI_1	RGCY	2 cut(s)	16, 83
CviQI	GTAC	3 cut(s)	7, 47, 250
EcoRII	CCWGG	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	205
FaeI	CATG	1 cut(s)	207
FaiI	YATR	6 cut(s)	31, 120, 205, 217, 219, 265
FatI	CATG	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	217
Hin1II	CATG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	46, 148
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	4, 59, 203, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	4 cut(s)	3, 30, 77, 85
LweI	GCATC	2 cut(s)	161, 190
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	74, 142, 211
MluCI	AATT	2 cut(s)	53, 136
MnlI	CCTC	1 cut(s)	300
Mph1103I	ATGCAT	1 cut(s)	205
MseI	TTAA	2 cut(s)	26, 270
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeI	CATATG	1 cut(s)	217
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	142, 211
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	15
RsaI	GTAC	3 cut(s)	8, 48, 251
RsaNI	GTAC	3 cut(s)	7, 47, 250
SaqAI	TTAA	2 cut(s)	26, 270
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	5 cut(s)	85, 144, 276, 286, 292
SfaNI	GCATC	2 cut(s)	161, 190
SfcI	CTRYAG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	53, 136
SsiI	CCGC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	46, 148
TaiI	ACGT	1 cut(s)	144
TasI	AATT	2 cut(s)	53, 136
TatI	WGTACW	3 cut(s)	6, 46, 249
Tru1I	TTAA	2 cut(s)	26, 270
Tru9I	TTAA	2 cut(s)	26, 270
TscAI	CASTG	3 cut(s)	49, 71, 151
TseFI	GTSAC	2 cut(s)	142, 211
Tsp45I	GTSAC	2 cut(s)	142, 211
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	3 cut(s)	49, 71, 151
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.