RchiOBHm_Chr2g0121931

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
34766955 .. 34769222
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGGATCGTTCTTTTTGTTTTCGGGCTACTTCATTTCGAAGCACGGTATTCCAAGTTACTGGATCTTCATGCATTACATTTCGCTGTTCAAATATCCGTTCGAGGGGTTTCTGATAAACGAGTTTTCGAATTCGGACAATTGCTTGGAGTACTTCTTTGGGAAGTGCATGGTGACCGGTGAAGACGTTCTGAGAGACGAAGGGTATGGAGAAGAGAGCCGGTGGAGGAATGTGGCGGTGATGGTGTGCTTTGTGCTTGTTTACAGAGAGCAAGAAATTTATGGAAATGTGGCTTCTTCTTTAAGGAACAGCTGA

Protein Analysis

104

Amino Acids

12.23

Weight (kDa)

5.03

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 3 - 42 1.4e-09 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AclWI GGATC 2 cut(s) 13, 71
AcsI RAATTY 2 cut(s) 130, 276
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 104
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 2 cut(s) 13, 71
ApoI RAATTY 2 cut(s) 130, 276
AsiGI ACCGGT 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 184, 191, 250
AsuII TTCGAA 2 cut(s) 38, 128
BbsI GAAGAC 1 cut(s) 189
BccI CCATC 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 189
BmcAI AGTACT 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 189
Bpu14I TTCGAA 2 cut(s) 38, 128
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 2 cut(s) 176, 219
Bse1I ACTGG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 176
BsiSI CCGG 2 cut(s) 177, 220
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
Bsp119I TTCGAA 2 cut(s) 38, 128
Bsp143I GATC 2 cut(s) 5, 63
BspACI CCGC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 183
BspPI GGATC 2 cut(s) 13, 71
BspT104I TTCGAA 2 cut(s) 38, 128
BsrFI RCCGGY 2 cut(s) 176, 219
BsrI ACTGG 1 cut(s) 65
BssAI RCCGGY 2 cut(s) 176, 219
BssMI GATC 2 cut(s) 5, 63
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 207
BstBI TTCGAA 2 cut(s) 38, 128
BstDEI CTNAG 1 cut(s) 191
BstEII GGTNACC 1 cut(s) 172
BstKTI GATC 2 cut(s) 8, 66
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 5, 63
BstPI GGTNACC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 60
BstYI RGATCY 1 cut(s) 63
Cfr10I RCCGGY 2 cut(s) 176, 219
Csp6I GTAC 1 cut(s) 151
CspAI ACCGGT 1 cut(s) 176
CviAII CATG 2 cut(s) 70, 169
CviJI RGCY 4 cut(s) 27, 219, 293, 312
CviKI_1 RGCY 4 cut(s) 27, 219, 293, 312
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 191
DpnI GATC 2 cut(s) 7, 65
DpnII GATC 2 cut(s) 5, 63
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco91I GGTNACC 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 2 cut(s) 73, 172
FaiI YATR 4 cut(s) 71, 170, 207, 282
FatI CATG 2 cut(s) 69, 168
HapII CCGG 2 cut(s) 177, 220
Hin1II CATG 2 cut(s) 73, 172
HpaII CCGG 2 cut(s) 177, 220
HphI GGTGA 3 cut(s) 184, 191, 250
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 114, 136, 192
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 73, 168
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 73, 172
Kzo9I GATC 2 cut(s) 5, 63
LpnPI CCDG 3 cut(s) 46, 190, 233
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 56, 172
MalI GATC 2 cut(s) 7, 65
MboI GATC 2 cut(s) 5, 63
MboII GAAGA 4 cut(s) 58, 194, 224, 288
MfeI CAATTG 1 cut(s) 139
MflI RGATCY 1 cut(s) 63
MluCI AATT 3 cut(s) 130, 139, 276
MnlI CCTC 2 cut(s) 97, 219
Mph1103I ATGCAT 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 2 cut(s) 177, 220
MunI CAATTG 1 cut(s) 139
NdeII GATC 2 cut(s) 5, 63
NlaIII CATG 2 cut(s) 73, 172
NmuCI GTSAC 1 cut(s) 172
NsiI ATGCAT 1 cut(s) 75
NspV TTCGAA 2 cut(s) 38, 128
PdmI GAANNNNTTC 1 cut(s) 186
PinAI ACCGGT 1 cut(s) 176
PspEI GGTNACC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 312
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 2 cut(s) 5, 63
ScaI AGTACT 1 cut(s) 152
SetI ASST 2 cut(s) 189, 314
SfuI TTCGAA 2 cut(s) 38, 128
Sse9I AATT 3 cut(s) 130, 139, 276
SsiI CCGC 1 cut(s) 236
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 38, 102, 128
TasI AATT 3 cut(s) 130, 139, 276
TatI WGTACW 1 cut(s) 150
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 22, 58
TspGWI ACGGA 1 cut(s) 87
XapI RAATTY 2 cut(s) 130, 276
XmnI GAANNNNTTC 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.