Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

37381065 .. 37382637

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCAGAAGGTATTCCATATAAACTATCTATTAATGCTTGTCATCTGTACGATTGTTTGAGGGCCAACAAATCAACTTCAGCTTGGGGTGTTGAGGCTCATGTACCCGTTCTAGACAAAAAATTCATCAAGACTGCTATTAGGCCTTATCTTGCGAGAATTGAGAAGCAGAAGGAGCAGTTCAGTGATGGTGTAACGGATGTGATGCTGATGCATGCAAGCTTTGCCTACCCTGAAAACACTCCTACCACAAAAGAAGGATACCATTATAGGAGTATCTTTGAGAATGTTGTAAATATTTGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

102

Amino Acids

11.59

Weight (kDa)

7.73

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	11 - 54	1.9e-06	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	2 cut(s)	50, 105
AluBI	AGCT	2 cut(s)	83, 222
AluI	AGCT	2 cut(s)	83, 222
AoxI	GGCC	2 cut(s)	63, 143
ApoI	RAATTY	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	63
BccI	CCATC	1 cut(s)	182
BciVI	GTATCC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	63
BmsI	GCATC	2 cut(s)	195, 201
BseGI	GGATG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	65, 145
BsnI	GGCC	2 cut(s)	65, 145
BspANI	GGCC	2 cut(s)	65, 145
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	216, 220
BstF5I	GGATG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 224
BstNSI	RCATGY	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	65, 145
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	216, 220
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	49, 104
CviAII	CATG	2 cut(s)	101, 215
CviJI	RGCY	5 cut(s)	65, 83, 98, 145, 222
CviKI_1	RGCY	5 cut(s)	65, 83, 98, 145, 222
CviQI	GTAC	2 cut(s)	49, 104
Eco147I	AGGCCT	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	216
FaeI	CATG	2 cut(s)	104, 218
FaiI	YATR	5 cut(s)	19, 21, 102, 216, 270
FatI	CATG	2 cut(s)	100, 214
FokI	GGATG	1 cut(s)	212
FspBI	CTAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	65, 145
Hin1II	CATG	2 cut(s)	104, 218
HindIII	AAGCTT	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	113, 130
HpyAV	CCTTC	2 cut(s)	166, 251
HpyCH4V	TGCA	2 cut(s)	214, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 224
Hsp92II	CATG	2 cut(s)	104, 218
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	1 cut(s)	246
LweI	GCATC	2 cut(s)	195, 201
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	193
MluCI	AATT	2 cut(s)	122, 159
MnlI	CCTC	2 cut(s)	54, 88
Mph1103I	ATGCAT	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	175, 224
NlaIII	CATG	2 cut(s)	104, 218
NsiI	ATGCAT	1 cut(s)	216
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	63
RsaI	GTAC	2 cut(s)	50, 105
RsaNI	GTAC	2 cut(s)	49, 104
SaqAI	TTAA	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	63
SetI	ASST	3 cut(s)	13, 85, 224
SfaNI	GCATC	2 cut(s)	195, 201
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	2 cut(s)	122, 159
SseBI	AGGCCT	1 cut(s)	145
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	145
TasI	AATT	2 cut(s)	122, 159
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	112
XceI	RCATGY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.