RchiOBHm_Chr2g0124101

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
37436209 .. 37436550
342 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 189 bp
ATGACTATTGCAAATGCATTGGTTGATGGGTACGGCAATTGTTGGAATGTGAATGCTTCGAAACAGGTTTTTGATGAGATGATTTGGAGGAGTGAGGTGAGATTGACTCTGCAGTCAGTTTCTTTGAAGCAATGGTGGAGGGAAGGTGGTGTGAGTATGATTCAGTTTCATAGTTTTGTCATCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

7.23

Weight (kDa)

6.52

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 59
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu14I TTCGAA 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse3DI GCAATG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 103
BsmI GAATGC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 59
BspMAI CTGCAG 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 110
Csp6I GTAC 1 cut(s) 31
CviQI GTAC 1 cut(s) 31
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 19
FaiI YATR 2 cut(s) 158, 171
HinfI GANTC 2 cut(s) 106, 160
HphI GGTGA 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 11, 17, 112
LpnPI CCDG 1 cut(s) 50
MfeI CAATTG 1 cut(s) 37
MluCI AATT 1 cut(s) 37
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 3 cut(s) 81, 88, 132
Mph1103I ATGCAT 1 cut(s) 19
MunI CAATTG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 19
NspV TTCGAA 1 cut(s) 59
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 160
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 114
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SchI GAGTC 1 cut(s) 100
SetI ASST 3 cut(s) 69, 99, 148
SfcI CTRYAG 1 cut(s) 110
SfuI TTCGAA 1 cut(s) 59
SgeI CNNG 1 cut(s) 77
Sse9I AATT 1 cut(s) 37
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 37
TfiI GAWTC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.