RchiOBHm_Chr2g0126881

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
41531557 .. 41531996
440 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGAGGGTGATTATTGGTTCATGGGGTCACAAAGTTGCCATAGAAGTAGGTCTCAAAGAGTCTGTAGTTGAAATCAAAACCAAGATAGAACAACTCTTGGGTGTCCCAGTTGCTTCACAAACCCTTGCAGTCTGTGGCTTGGAGTTGCTAGATGGATTAGACATGGAAGATTACCCGATTGTCACTGAAGGTACCAAAATTGACCTCACCATCAGATATTGGATGTCACCCCCTAATTTTTACCATTCAGGTAAAATTCAGATTATCATCAAGTTTTCAGCTAGACAGCTCCACATAGAGGTTGACAGGACCGAAACGGTGCGCAGCCTCAAAGAAAAATACACATCATCGATGGCACCCCTATCAAAAGAATGTCACTCTTCTTTTGTGGAATCGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

133

Amino Acids

14.92

Weight (kDa)

6.07

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 9 - 72 2.4e-08 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 323
Acc65I GGTACC 1 cut(s) 191
AccB1I GGYRCC 2 cut(s) 191, 355
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 3 cut(s) 281, 289, 399
AluI AGCT 3 cut(s) 281, 289, 399
Alw26I GTCTC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 255
Asp718I GGTACC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 309
AsuHPI GGTGA 3 cut(s) 19, 199, 219
AvaII GGWCC 1 cut(s) 309
BanI GGYRCC 2 cut(s) 191, 355
BbvI GCAGC 1 cut(s) 336
BccI CCATC 3 cut(s) 146, 218, 346
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 3 cut(s) 149, 282, 400
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 325
BlsI GCNGC 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 2 cut(s) 193, 357
BmrI ACTGGG 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 350
BsaBI GATNNNNATC 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 350
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 336
BshNI GGYRCC 2 cut(s) 191, 355
BshVI ATCGAT 1 cut(s) 350
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 56
BspDI ATCGAT 1 cut(s) 350
BspLI GGNNCC 2 cut(s) 193, 357
BspT107I GGYRCC 2 cut(s) 191, 355
BspTNI GGTCTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 385
BstF5I GGATG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 324
BstMAI GTCTC 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 336
Bsu15I ATCGAT 1 cut(s) 350
BsuTUI ATCGAT 1 cut(s) 350
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 183
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 350
Csp6I GTAC 1 cut(s) 192
CviAII CATG 2 cut(s) 21, 163
CviJI RGCY 5 cut(s) 138, 281, 289, 327, 399
CviKI_1 RGCY 5 cut(s) 138, 281, 289, 327, 399
CviQI GTAC 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 207
FaeI CATG 2 cut(s) 24, 166
FaiI YATR 4 cut(s) 22, 41, 164, 296
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 20, 162
Fnu4HI GCNGC 1 cut(s) 325
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 325
FspBI CTAG 3 cut(s) 149, 282, 400
FspI TGCGCA 1 cut(s) 323
GlaI GCGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 325
HhaI GCGC 1 cut(s) 324
Hin1II CATG 2 cut(s) 24, 166
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 2 cut(s) 59, 392
HphI GGTGA 3 cut(s) 19, 199, 219
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 215, 261
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 1 cut(s) 128
Hsp92II CATG 2 cut(s) 24, 166
HspAI GCGC 1 cut(s) 322
KpnI GGTACC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 3 cut(s) 120, 234, 292
Lsp1109I GCAGC 1 cut(s) 336
MaeI CTAG 3 cut(s) 149, 282, 400
MaeIII GTNAC 4 cut(s) 26, 181, 225, 374
MboII GAAGA 2 cut(s) 179, 372
MluCI AATT 3 cut(s) 198, 235, 255
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 3 cut(s) 215, 292, 338
NlaIII CATG 2 cut(s) 24, 166
NlaIV GGNNCC 2 cut(s) 193, 357
NmuCI GTSAC 4 cut(s) 26, 181, 225, 374
NsbI TGCGCA 1 cut(s) 323
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 1 cut(s) 326
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 193, 357
PspPI GGNCC 1 cut(s) 309
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SatI GCNGC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 1 cut(s) 68
SetI ASST 8 cut(s) 52, 193, 207, 253, 283, 291, 303, 401
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 309
Sse9I AATT 3 cut(s) 198, 235, 255
SspMI CTAG 3 cut(s) 149, 282, 400
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 350, 395
TaqII GACCGA 1 cut(s) 326
TasI AATT 3 cut(s) 198, 235, 255
TfiI GAWTC 1 cut(s) 392
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 4 cut(s) 26, 181, 225, 374
TseI GCWGC 1 cut(s) 324
Tsp45I GTSAC 4 cut(s) 26, 181, 225, 374
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 1 cut(s) 255
XspI CTAG 3 cut(s) 149, 282, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.