Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

42175714 .. 42178001

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCCACCTCCTCACTATGGTAGACAAGGGGGAGGCAATAATCATGGCGGTTCTCATCGGCAAGGTAGAGATTTTCATCGGAAACGACAGCGTGATGATGACCGCCAGTCATATGAGACCTCAAAGAGAAACTCAAATTATGAACCGCGGAAGAACTCTGATCTCGACTCTAGACCGGAGAAAAATCCACGGTTTCGTGAGAGTGGTGACTCTGATGATGAGGAAGAAGATGGCAAAAAGCGGCGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

83

Amino Acids

9.79

Weight (kDa)

9.45

Isoelectric Point (pI)

82.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	22
AccII	CGCG	1 cut(s)	148
AciI	CCGC	5 cut(s)	48, 103, 146, 148, 241
AfiI	CCNNNNNNNGG	1 cut(s)	17
AhdI	GACNNNNNGTC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	218
BccI	CCATC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
BmeRI	GACNNNNNGTC	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	146, 188
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	146, 188
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	110
Bso31I	GGTCTC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	5 cut(s)	48, 103, 146, 148, 241
BspFNI	CGCG	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	146, 188
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	192
BstDSI	CCRYGG	2 cut(s)	146, 188
BstFNI	CGCG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	160
BstUI	CGCG	1 cut(s)	148
BtgI	CCRYGG	2 cut(s)	146, 188
Cfr42I	CCGCGG	1 cut(s)	149
CviAII	CATG	1 cut(s)	44
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DriI	GACNNNNNGTC	1 cut(s)	106
Eam1105I	GACNNNNNGTC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	110
FaeI	CATG	1 cut(s)	47
FaiI	YATR	5 cut(s)	18, 45, 112, 114, 141
FatI	CATG	1 cut(s)	43
FauNDI	CATATG	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	242
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	1 cut(s)	47
HinfI	GANTC	2 cut(s)	167, 209
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	81, 160, 214
Hpy188III	TCNNGA	3 cut(s)	164, 171, 197
Hpy8I	GTNNAC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	47
KspI	CCGCGG	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	2 cut(s)	119, 189
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	3 cut(s)	163, 236, 239
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	161, 203
MnlI	CCTC	5 cut(s)	18, 21, 26, 130, 214
MseI	TTAA	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	148
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	243
PleI	GAGTC	2 cut(s)	161, 203
PpsI	GAGTC	2 cut(s)	161, 203
SacII	CCGCGG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	250
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	161, 203
SetI	ASST	4 cut(s)	10, 67, 122, 250
Sfr303I	CCGCGG	1 cut(s)	149
SgrBI	CCGCGG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	5 cut(s)	48, 103, 146, 148, 241
SspMI	CTAG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	250
Tru9I	TTAA	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	65, 156
XbaI	TCTAGA	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	22
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.