Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

42246973 .. 42247416

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAGAATGAGAATGGTTATTCGCATCAGAAATGGAATTTCCGAGCGAATGAAGAACTGAACACTGCCTCAATCTCCGTCCGTGGTGTTCTCAACACGTTAGCAAAGAATCTCAACTCCGACGATCGACGGTCCACCATTATGCTGGGCCGCGGAGACCCGACTGAGTTTGCATCATTCTGGACGGCTCCTCCCGCCGCTGATGCCGTCTCAGAGGCCCTCCAATCCTTCAAGTTCAACTCTTATTGTCCTACCGGCGGTGTTTTCGCAGCAAGAAGGTATGTCTTGTCAACTCTTCAACTCTGTGAGCCCTCATCATCATCTTTTTTGCACAAGCACAACCGTCTATGGTGGCTCGAACGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

122

Amino Acids

13.87

Weight (kDa)

8.71

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	6 cut(s)	151, 153, 195, 198, 258, 364
AcsI	RAATTY	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	232, 238, 299
Alw26I	GTCTC	2 cut(s)	150, 214
AoxI	GGCC	2 cut(s)	148, 216
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	132, 148, 217
AvaII	GGWCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	281
BceAI	ACGGC	2 cut(s)	191, 201
BcoDI	GTCTC	2 cut(s)	150, 214
BisI	GCNGC	4 cut(s)	151, 198, 270, 364
BlsI	GCNGC	4 cut(s)	152, 199, 271, 365
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	132, 148, 217
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	3 cut(s)	34, 182, 193
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	82, 151
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	82, 151
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	2 cut(s)	156, 225
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	281
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	150, 218
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	150, 214
BsmBI	CGTCTC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	150, 218
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	6 cut(s)	151, 153, 195, 198, 258, 364
BspANI	GGCC	2 cut(s)	150, 218
BspCNI	CTCAG	2 cut(s)	157, 224
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	82, 151
BssMI	GATC	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	132, 344
Bst6I	CTCTTC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	165, 211
BstDSI	CCRYGG	2 cut(s)	82, 151
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	150, 214
BstMBI	GATC	1 cut(s)	124
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 203
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	281
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	150, 218
BtgI	CCRYGG	2 cut(s)	82, 151
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	3 cut(s)	132, 148, 217
Cfr42I	CCGCGG	1 cut(s)	154
CviJI	RGCY	5 cut(s)	150, 188, 218, 310, 355
CviKI_1	RGCY	5 cut(s)	150, 188, 218, 310, 355
DdeI	CTNAG	2 cut(s)	165, 211
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	214
FaiI	YATR	3 cut(s)	143, 282, 349
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	151, 198, 270, 364
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	4 cut(s)	151, 198, 270, 364
GluI	GCNGC	4 cut(s)	151, 198, 270, 364
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	150, 218
HapII	CCGG	1 cut(s)	255
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	255
Hpy166II	GTNNAC	2 cut(s)	135, 291
Hpy188I	TCNGA	4 cut(s)	30, 44, 121, 214
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	2 cut(s)	135, 291
Hpy99I	CGWCG	2 cut(s)	125, 132
HpyAV	CCTTC	2 cut(s)	238, 270
HpyCH4III	ACNGT	2 cut(s)	132, 344
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	173, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 203
HpyF3I	CTNAG	2 cut(s)	165, 211
HpySE526I	ACGT	1 cut(s)	98
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	3 cut(s)	131, 166, 268
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	3 cut(s)	34, 182, 193
MaeII	ACGT	1 cut(s)	98
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	2 cut(s)	65, 287
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	79, 201, 208, 230, 322
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	3 cut(s)	153, 200, 366
MspI	CCGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	194, 203
NdeII	GATC	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	152, 199, 271, 365
Ple19I	CGATCG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	3 cut(s)	132, 148, 217
PvuI	CGATCG	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	140
SacII	CCGCGG	1 cut(s)	154
SatI	GCNGC	4 cut(s)	151, 198, 270, 364
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	3 cut(s)	132, 148, 217
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	2 cut(s)	101, 281
SfaNI	GCATC	3 cut(s)	34, 182, 193
Sfr303I	CCGCGG	1 cut(s)	154
SgrBI	CCGCGG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	6 cut(s)	151, 153, 195, 198, 258, 364
TaaI	ACNGT	2 cut(s)	132, 344
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	2 cut(s)	127, 357
TasI	AATT	1 cut(s)	37
TauI	GCSGC	3 cut(s)	153, 200, 366
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	2 cut(s)	67, 71
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.