RchiOBHm_Chr2g0128281

Arogenate dehydrogenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024814
Physical Location & Seq
Reverse (-)
43223750 .. 43224686
937 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGGTTGAAATGTCTTGTGCAGAGCATGATAGGCATGCAGCAGGGTCACAATTCCTTACGCACACAATAGGAAGGGTTTTGGAGAAGCTGGGTTTGGAGTCGACACCTATCTTTACAAATGGTTACAAGACTTTATTGAATTTGGTGGAGACTACAGTAGGAGATAGTTTTGATCTTTACTATGGCTTGTTCATGTATAATGTAAATTCAATGGACCAGCTAAATAGATTGGGCATGGTTTTTGACTCATTAGAGGAGCAGTTTCTGGGGCGTTTGCATGGTGTTCTCCATAAGCAACATTCTGAGAATGCAAGCAAAATCTTGTTGCCAAATCATCCAAGAATGCAGCTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230
Pfam Domains
Protein Families
F420_oxidored PDH

Protein Analysis

118

Amino Acids

13.45

Weight (kDa)

6.02

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TYRAAT1_C PF26213 26 - 99 8e-31 TYRAAT1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024814)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0128281
rosa_multiflora Rmu_sc0003465.1_g000023
rosa_samantha Rh2BG340200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 101
AcsI RAATTY 2 cut(s) 139, 205
AgsI TTSAA 3 cut(s) 8, 139, 210
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 3 cut(s) 88, 220, 349
AluI AGCT 3 cut(s) 88, 220, 349
Alw26I GTCTC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 38, 346
ApoI RAATTY 2 cut(s) 139, 205
AspS9I GGNCC 1 cut(s) 214
AvaII GGWCC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 39, 347
BlsI GCNGC 2 cut(s) 40, 348
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BseGI GGATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 143
BsmI GAATGC 2 cut(s) 313, 348
Bsp143I GATC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 295
BssMI GATC 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 36, 313
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 36, 313
CaiI CAGNNNCTG 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 214
CviAII CATG 5 cut(s) 26, 35, 193, 235, 278
CviJI RGCY 4 cut(s) 88, 186, 220, 349
CviKI_1 RGCY 4 cut(s) 88, 186, 220, 349
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 214
FaeI CATG 5 cut(s) 29, 38, 196, 238, 281
FaiI YATR 8 cut(s) 27, 36, 183, 194, 198, 236, 279, 291
FatI CATG 5 cut(s) 25, 34, 192, 234, 277
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 2 cut(s) 39, 347
FokI GGATG 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 39, 347
GluI GCNGC 2 cut(s) 39, 347
GsaI CCCAGC 1 cut(s) 92
Hin1II CATG 5 cut(s) 29, 38, 196, 238, 281
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 2 cut(s) 98, 245
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 304
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 5 cut(s) 20, 38, 277, 311, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 5 cut(s) 29, 38, 196, 238, 281
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 256, 354
LpnPI CCDG 4 cut(s) 27, 74, 230, 251
Lsp1109I GCAGC 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 45, 122
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MluCI AATT 3 cut(s) 50, 139, 205
MlyI GAGTC 2 cut(s) 107, 239
MnlI CCTC 1 cut(s) 247
Mva1269I GAATGC 2 cut(s) 313, 348
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 1 cut(s) 172
NlaIII CATG 5 cut(s) 29, 38, 196, 238, 281
NmuCI GTSAC 1 cut(s) 45
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PctI GAATGC 2 cut(s) 313, 348
PkrI GCNGC 2 cut(s) 40, 348
PleI GAGTC 2 cut(s) 106, 239
PpsI GAGTC 2 cut(s) 106, 239
PspFI CCCAGC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 265
SalI GTCGAC 1 cut(s) 100
SatI GCNGC 2 cut(s) 39, 347
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 2 cut(s) 107, 239
SetI ASST 4 cut(s) 90, 109, 222, 351
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 214
SphI GCATGC 1 cut(s) 38
Sse9I AATT 3 cut(s) 50, 139, 205
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 101
TasI AATT 3 cut(s) 50, 139, 205
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 2 cut(s) 38, 346
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 139, 205
XceI RCATGY 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.