RchiOBHm_Chr2g0129051

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
44648070 .. 44648639
570 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGTGTTCTTCAGAAGGTGATTGCAGGCCTTTGGGTTTTCTACTCGGCCTTCCCTTTGCTTTTCTCTCCCTCCTCCTCTCCATCGTCGGCATCGTTATCTGGATCGTCGGTTTTCTTGATTGCTATGTGATTTTGCTTATCTGGCTGTCTTCAACTTCTTGCTATCTTATCTTGGTATCTGTTTCTTTCTTGATTGTTAGCAATTTGGTCATTTGGGTACCTACAATTTGCTGCTGTCTTATTTGGGTGTCAATTATTTTCTTGATTGGTCTAGCAATTCGTTTATTATTGCTGACATGCATTTGTCCGTGCTGCTTGTGCGTGACGGTTATAGTGGAGGTGGCTCTGGAGTTGGTCAAGGCACCAATTCATGTCATGGAGTGGTTCACTGAGCAAATCCCGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.96

Weight (kDa)

4.49

Isoelectric Point (pI)

25.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 217
AccB1I GGYRCC 2 cut(s) 217, 361
AclWI GGATC 1 cut(s) 110
AfaI GTAC 1 cut(s) 219
AgsI TTSAA 1 cut(s) 153
AlwI GGATC 1 cut(s) 110
AoxI GGCC 2 cut(s) 26, 46
ApeKI GCWGC 2 cut(s) 231, 312
Asp718I GGTACC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 29
BanI GGYRCC 2 cut(s) 217, 361
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 218, 299
BccI CCATC 1 cut(s) 89
BfaI CTAG 1 cut(s) 272
BisI GCNGC 2 cut(s) 232, 313
BlsI GCNGC 2 cut(s) 233, 314
BmiI GGNNCC 2 cut(s) 219, 363
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 368
BseMII CTCAG 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 62, 65
BseXI GCAGC 2 cut(s) 218, 299
BshFI GGCC 2 cut(s) 28, 48
BshNI GGYRCC 2 cut(s) 217, 361
BsnI GGCC 2 cut(s) 28, 48
Bsp143I GATC 1 cut(s) 102
BspANI GGCC 2 cut(s) 28, 48
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 219, 363
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 2 cut(s) 217, 361
BssMI GATC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 390
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 142, 318
BstNSI RCATGY 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 218, 299
BstV2I GAAGAC 1 cut(s) 141
BsuRI GGCC 2 cut(s) 28, 48
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 218
CviAII CATG 3 cut(s) 297, 371, 376
CviJI RGCY 4 cut(s) 28, 48, 145, 344
CviKI_1 RGCY 4 cut(s) 28, 48, 145, 344
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 390
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 302
FaeI CATG 3 cut(s) 300, 374, 379
FaiI YATR 5 cut(s) 126, 298, 332, 372, 377
FatI CATG 3 cut(s) 296, 370, 375
Fnu4HI GCNGC 2 cut(s) 232, 313
Fsp4HI GCNGC 2 cut(s) 232, 313
FspBI CTAG 1 cut(s) 272
GluI GCNGC 2 cut(s) 232, 313
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 2 cut(s) 28, 48
Hin1II CATG 3 cut(s) 300, 374, 379
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 5 cut(s) 100, 116, 190, 262, 347
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 2 cut(s) 89, 110
HpyAV CCTTC 2 cut(s) 8, 59
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 24, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 318
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 3 cut(s) 300, 374, 379
KpnI GGTACC 1 cut(s) 221
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 4 cut(s) 10, 85, 127, 332
Lsp1109I GCAGC 2 cut(s) 218, 299
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 322
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 1 cut(s) 141
MluCI AATT 5 cut(s) 202, 225, 252, 276, 366
MnlI CCTC 4 cut(s) 80, 83, 86, 331
Mph1103I ATGCAT 1 cut(s) 302
MseI TTAA 1 cut(s) 406
MwoI GCNNNNNNNGC 2 cut(s) 142, 318
NdeII GATC 1 cut(s) 102
NlaIII CATG 3 cut(s) 300, 374, 379
NlaIV GGNNCC 2 cut(s) 219, 363
NmeAIII GCCGAG 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 302
NspI RCATGY 1 cut(s) 300
PceI AGGCCT 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 2 cut(s) 233, 314
PspN4I GGNNCC 2 cut(s) 219, 363
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 406
SatI GCNGC 2 cut(s) 232, 313
Sau3AI GATC 1 cut(s) 102
SetI ASST 3 cut(s) 19, 223, 342
SfaNI GCATC 1 cut(s) 99
Sse9I AATT 5 cut(s) 202, 225, 252, 276, 366
SseBI AGGCCT 1 cut(s) 28
SspMI CTAG 1 cut(s) 272
StuI AGGCCT 1 cut(s) 28
TaaI ACNGT 1 cut(s) 328
TasI AATT 5 cut(s) 202, 225, 252, 276, 366
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 231, 312
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 1 cut(s) 394
XceI RCATGY 1 cut(s) 300
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.