Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

49883475 .. 49884185

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCATGTGCATGTTGAATGTGGTTTCGAATTTGTGGTTGTCGAAGCTTTTGTGACAATTCAAATGGACGCTATGGACTATAGCTCTGATGAAGAATCAGATAACAATGAATCTGAGATCAGTGACTACAAAGACAAACCTTACGAGCAGTTACGAAGTGGAAAGTTGAAAGTAAAGGGTCCTAATGGCACCCTCAGATGCCCCTTTTGTGCTAGAAAGAAGAAACAAGATTATAAGCACAAGGATCTGCTTCAACATGCTTCCGGGGTGGCTAAAGGTTCTGCTAACAGAAGCACAGTCCAAAAGGCCAACCACAAAGCACGGATACGTGATTTTGGCCTCGTATCCCTTATCGAGTCGGAAAAAGGGTACGATACGGTCGGATACGGTATGGAAATGTGCGTATCCCATGCAGATACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

140

Amino Acids

15.74

Weight (kDa)

6.29

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-XS	PF03470	67 - 107	9.8e-17	XS zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	17, 62, 169, 254
AluBI	AGCT	2 cut(s)	47, 84
AluI	AGCT	2 cut(s)	47, 84
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	2 cut(s)	306, 337
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	188
BciVI	GTATCC	4 cut(s)	318, 355, 377, 415
BcnI	CCSGG	1 cut(s)	265
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	79
BfuI	GTATCC	4 cut(s)	318, 355, 377, 415
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	180, 190
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	265
BsaAI	YACGTR	2 cut(s)	329, 420
BsaJI	CCNNGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	105, 208
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	308, 339
BshNI	GGYRCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	264
BsnI	GGCC	2 cut(s)	308, 339
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	117, 244
BspANI	GGCC	2 cut(s)	308, 339
BspCNI	CTCAG	2 cut(s)	106, 207
BspLI	GGNNCC	2 cut(s)	180, 190
BspPI	GGATC	1 cut(s)	252
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	117, 244
Bst4CI	ACNGT	3 cut(s)	298, 379, 389
BstBAI	YACGTR	2 cut(s)	329, 420
BstBI	TTCGAA	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	114, 194
BstKTI	GATC	2 cut(s)	120, 247
BstMBI	GATC	2 cut(s)	117, 244
BstMCI	CGRYCG	1 cut(s)	381
BstNSI	RCATGY	3 cut(s)	8, 14, 260
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	79
BstSNI	TACGTA	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuI	GTATCC	4 cut(s)	318, 355, 377, 415
BsuRI	GGCC	2 cut(s)	308, 339
BtsIMutI	CAGTG	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	4 cut(s)	5, 11, 257, 410
CviJI	RGCY	5 cut(s)	47, 84, 272, 308, 339
CviKI_1	RGCY	5 cut(s)	47, 84, 272, 308, 339
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	114, 194
DpnI	GATC	2 cut(s)	119, 246
DpnII	GATC	2 cut(s)	117, 244
Eco105I	TACGTA	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 14, 260, 413
FaiI	YATR	8 cut(s)	6, 12, 74, 81, 234, 258, 392, 411
FatI	CATG	4 cut(s)	4, 10, 256, 409
FspBI	CTAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	308, 339
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	8, 14, 260, 413
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	3 cut(s)	95, 110, 356
HpaII	CCGG	1 cut(s)	264
Hpy188I	TCNGA	6 cut(s)	88, 100, 115, 197, 361, 383
HpyCH4III	ACNGT	3 cut(s)	298, 379, 389
HpyCH4IV	ACGT	2 cut(s)	328, 419
HpyCH4V	TGCA	3 cut(s)	4, 10, 413
HpyF3I	CTNAG	2 cut(s)	114, 194
HpySE526I	ACGT	2 cut(s)	328, 419
Hsp92II	CATG	4 cut(s)	8, 14, 260, 413
Kzo9I	GATC	2 cut(s)	117, 244
LpnPI	CCDG	1 cut(s)	277
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	2 cut(s)	328, 419
MaeIII	GTNAC	3 cut(s)	52, 122, 150
MalI	GATC	2 cut(s)	119, 246
MboI	GATC	2 cut(s)	117, 244
MboII	GAAGA	2 cut(s)	104, 232
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	2 cut(s)	29, 57
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	2 cut(s)	339, 361
MnlI	CCTC	2 cut(s)	203, 350
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	9
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	265
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	2 cut(s)	117, 244
NlaIII	CATG	4 cut(s)	8, 14, 260, 413
NlaIV	GGNNCC	2 cut(s)	180, 190
NmuCI	GTSAC	2 cut(s)	52, 122
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	8, 14, 260
NspV	TTCGAA	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	95, 110
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
Ppu21I	YACGTR	2 cut(s)	329, 420
PpuMI	RGGWCCY	1 cut(s)	179
PsiI	TTATAA	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	180, 190
PspPI	GGNCC	1 cut(s)	179
PspPPI	RGGWCCY	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	117, 244
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	265
SetI	ASST	6 cut(s)	49, 86, 142, 280, 331, 422
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	9
SnaBI	TACGTA	1 cut(s)	420
Sse9I	AATT	2 cut(s)	29, 57
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	3 cut(s)	298, 379, 389
TaiI	ACGT	2 cut(s)	331, 422
TaqI	TCGA	3 cut(s)	27, 42, 354
TasI	AATT	2 cut(s)	29, 57
TfiI	GAWTC	2 cut(s)	95, 110
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	2 cut(s)	52, 122
Tsp45I	GTSAC	2 cut(s)	52, 122
TspDTI	ATGAA	2 cut(s)	105, 123
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	3 cut(s)	8, 14, 260
XspI	CTAG	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.