RchiOBHm_Chr2g0134741

glycerol

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
51823598 .. 51824104
507 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGACAAGGTTTACAAACAAGGCTCACCTTGCTCAGGCGGTGCTTGAGAGTATGTGTTTCCAGGTGAATGATGTGGTAGATTCAATGCACAAAGATGCTGGAGAGAAGGGAGAGGTTAAGAATGAGATGGGAGAGTTCTTGCTGAGAGTGGATGGCGGTGCTACTGTTAATAACCTTCTAATGCAGATCCAGCTGGCCATATGTTCTTTCCGTATGCGAATGAGCTGCCAGACTTTGGTGAAGTTCCAAAGCTCTGTATGCTAA

Protein Analysis

87

Amino Acids

9.73

Weight (kDa)

6.7

Isoelectric Point (pI)

30.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_C PF02782 3 - 70 1.9e-08 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 235
AciI CCGC 2 cut(s) 38, 156
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 195
AfiI CCNNNNNNNGG 2 cut(s) 34, 235
AgsI TTSAA 1 cut(s) 84
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 3 cut(s) 193, 225, 252
AluI AGCT 3 cut(s) 193, 225, 252
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 225
AsuHPI GGTGA 3 cut(s) 17, 76, 250
BalI TGGCCA 1 cut(s) 197
BbvI GCAGC 1 cut(s) 212
BccI CCATC 2 cut(s) 121, 146
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 1 cut(s) 62
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 235
BseBI CCWGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 34, 235
BseMII CTCAG 2 cut(s) 47, 134
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 34, 235
BsnI GGCC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 2 cut(s) 38, 156
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 46, 135
BspPI GGATC 1 cut(s) 181
BssMI GATC 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 33, 143
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 29, 190, 258
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 195
CviJI RGCY 5 cut(s) 23, 193, 197, 225, 252
CviKI_1 RGCY 5 cut(s) 23, 193, 197, 225, 252
DdeI CTNAG 2 cut(s) 33, 143
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 60
FaiI YATR 5 cut(s) 53, 200, 202, 215, 259
FauNDI CATATG 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 197
HinfI GANTC 1 cut(s) 80
HphI GGTGA 3 cut(s) 17, 76, 250
Hpy166II GTNNAC 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 100, 185
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 88, 184
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 190, 258
HpyF3I CTNAG 2 cut(s) 33, 143
Kzo9I GATC 1 cut(s) 186
LpnPI CCDG 7 cut(s) 20, 47, 74, 84, 179, 203, 242
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 85
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MflI RGATCY 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 1 cut(s) 106
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 2 cut(s) 117, 168
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 29, 190, 258
NdeI CATATG 1 cut(s) 200
NdeII GATC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 2 cut(s) 117, 168
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 62
SetI ASST 8 cut(s) 11, 30, 66, 117, 177, 195, 227, 254
SfaNI GCATC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 2 cut(s) 38, 156
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 166
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 117, 168
Tru9I TTAA 2 cut(s) 117, 168
TseI GCWGC 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 235
XagI CCTNNNNNAGG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.