RchiOBHm_Chr2g0136381
ERF Family

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
53773290 .. 53774948
1659 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
ATGAAGGAAATTGTGGGAAACCCTCTACATCTAAAATCTCTGAACCACATCTCACTTATCTGCAGATCAGTTGAAGAATCCATTGATTTTACCAAACTGTTCTTGGGTTTATCCCAATTAGAAGGCCTGGATCATTTGATTTTGATGGGGCATGGTTATTCGGGTATGGAATCGGAATCCATCTTTTGCAATCTGAGGAGCCGGATAAGATGCCCAAGAAGACTGAGATTAATCCCAAAGATAATCACATTTCTTTTCAGATCTATTTGTGAGAGCATGGGAGCAGTGGAGAAGAAGCTGAAGGAGATGGAGCTGAACTATAAACGGTCGATGGTGGAGGAAGGCGGTATCCACGTCGATCAGTTGTTCTTCCATGACCCGGACGGCTTCATGATCGAAATATGCGACTGTGACAACCTCCCGGTGATTCCGATAGGCGGCTCGGTGGCTCGGGCATGTTCTCTTGTAAACCTGCCGATGTTGCAGCAGCAACAGCAGATACGAGTCACCCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase

Protein Analysis

172

Amino Acids

19.59

Weight (kDa)

6.59

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 480
AciI CCGC 2 cut(s) 345, 438
AclWI GGATC 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 379, 437
AgsI TTSAA 1 cut(s) 74
AjiI CACGTC 1 cut(s) 355
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 298, 313
AluI AGCT 2 cut(s) 298, 313
AlwI GGATC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 484, 487
AseI ATTAAT 1 cut(s) 230
AsuC2I CCSGG 2 cut(s) 380, 422
AsuHPI GGTGA 2 cut(s) 436, 499
AvaI CYCGRG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 496, 499
BccI CCATC 4 cut(s) 139, 188, 301, 325
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 128
BciVI GTATCC 1 cut(s) 359
BcnI CCSGG 2 cut(s) 380, 422
BfmI CTRYAG 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 480
BfuI GTATCC 1 cut(s) 359
BglII AGATCT 1 cut(s) 260
BisI GCNGC 3 cut(s) 439, 485, 488
BlsI GCNGC 3 cut(s) 440, 486, 489
Bme1390I CCNGG 3 cut(s) 128, 380, 422
BmeT110I CYCGRG 1 cut(s) 450
BmgBI CACGTC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 3 cut(s) 128, 380, 422
BmsI GCATC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 226
BpuMI CCSGG 2 cut(s) 380, 422
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 437
BseBI CCWGG 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 379, 437
BseMII CTCAG 2 cut(s) 185, 215
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 496, 499
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 3 cut(s) 202, 380, 422
BslI CCNNNNNNNGG 2 cut(s) 379, 437
BsnI GGCC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 450
Bsp143I GATC 5 cut(s) 65, 130, 260, 358, 393
BspACI CCGC 2 cut(s) 345, 438
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 186, 216
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 200
BspMAI CTGCAG 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 480
BspPI GGATC 1 cut(s) 138
BssMI GATC 5 cut(s) 65, 130, 260, 358, 393
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 4 cut(s) 99, 327, 410, 516
BstDEI CTNAG 2 cut(s) 194, 224
BstKTI GATC 5 cut(s) 68, 133, 263, 361, 396
BstMBI GATC 5 cut(s) 65, 130, 260, 358, 393
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 2 cut(s) 481, 493
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 459
BstSCI CCNGG 3 cut(s) 126, 378, 420
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 496, 499
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 1 cut(s) 126
BtrI CACGTC 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 480
CciI TCATGA 1 cut(s) 390
CviAII CATG 5 cut(s) 152, 277, 374, 391, 456
CviJI RGCY 7 cut(s) 126, 201, 298, 313, 387, 441, 449
CviKI_1 RGCY 7 cut(s) 126, 201, 298, 313, 387, 441, 449
DdeI CTNAG 2 cut(s) 194, 224
DpnI GATC 5 cut(s) 67, 132, 262, 360, 395
DpnII GATC 5 cut(s) 65, 130, 260, 358, 393
Eco147I AGGCCT 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 5 cut(s) 155, 280, 377, 394, 459
FaiI YATR 8 cut(s) 153, 167, 278, 321, 375, 392, 403, 457
FatI CATG 5 cut(s) 151, 276, 373, 390, 455
Fnu4HI GCNGC 3 cut(s) 439, 485, 488
Fsp4HI GCNGC 3 cut(s) 439, 485, 488
GluI GCNGC 3 cut(s) 439, 485, 488
HaeIII GGCC 1 cut(s) 126
HapII CCGG 3 cut(s) 202, 380, 422
Hin1II CATG 5 cut(s) 155, 280, 377, 394, 459
HinfI GANTC 5 cut(s) 77, 170, 176, 427, 504
HpaII CCGG 3 cut(s) 202, 380, 422
HphI GGTGA 2 cut(s) 436, 499
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 5 cut(s) 42, 175, 195, 260, 432
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 1 cut(s) 469
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 3 cut(s) 116, 295, 335
HpyCH4III ACNGT 4 cut(s) 99, 327, 410, 516
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 3 cut(s) 63, 189, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 481, 493
HpyF3I CTNAG 2 cut(s) 194, 224
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 5 cut(s) 155, 280, 377, 394, 459
Kzo9I GATC 5 cut(s) 65, 130, 260, 358, 393
LmnI GCTCC 3 cut(s) 198, 281, 310
LpnPI CCDG 6 cut(s) 113, 140, 215, 393, 435, 485
Lsp1109I GCAGC 2 cut(s) 496, 499
LweI GCATC 1 cut(s) 200
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 410, 505
MalI GATC 5 cut(s) 67, 132, 262, 360, 395
MboI GATC 5 cut(s) 65, 130, 260, 358, 393
MboII GAAGA 4 cut(s) 86, 231, 304, 361
MflI RGATCY 1 cut(s) 260
MluCI AATT 2 cut(s) 9, 116
MlyI GAGTC 1 cut(s) 513
MnlI CCTC 4 cut(s) 33, 189, 331, 428
MseI TTAA 1 cut(s) 230
MspI CCGG 3 cut(s) 202, 380, 422
MspR9I CCNGG 3 cut(s) 128, 380, 422
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 481, 493
NciI CCSGG 2 cut(s) 380, 422
NdeII GATC 5 cut(s) 65, 130, 260, 358, 393
NlaIII CATG 5 cut(s) 155, 280, 377, 394, 459
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 2 cut(s) 410, 505
NspI RCATGY 1 cut(s) 459
PagI TCATGA 1 cut(s) 390
PceI AGGCCT 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PfeI GAWTC 4 cut(s) 77, 170, 176, 427
PkrI GCNGC 3 cut(s) 440, 486, 489
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
PshBI ATTAAT 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 260
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 3 cut(s) 439, 485, 488
Sau3AI GATC 5 cut(s) 65, 130, 260, 358, 393
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 3 cut(s) 128, 380, 422
SetI ASST 5 cut(s) 300, 315, 357, 420, 474
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 61
Sse9I AATT 2 cut(s) 9, 116
SseBI AGGCCT 1 cut(s) 126
SsiI CCGC 2 cut(s) 345, 438
StuI AGGCCT 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 126, 378, 420
TaaI ACNGT 4 cut(s) 99, 327, 410, 516
TaiI ACGT 1 cut(s) 357
TaqI TCGA 3 cut(s) 329, 357, 396
TasI AATT 2 cut(s) 9, 116
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 4 cut(s) 77, 170, 176, 427
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 2 cut(s) 410, 505
TseI GCWGC 2 cut(s) 484, 487
Tsp45I GTSAC 2 cut(s) 410, 505
TspDTI ATGAA 2 cut(s) 17, 379
TspRI CASTG 1 cut(s) 291
VspI ATTAAT 1 cut(s) 230
XceI RCATGY 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.