Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

54791942 .. 54792139

Gene Structure 198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGATTCTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAAATACCTTCTTCGAGTCATGAAATATAAGGGCCCTCAAACCAGCCAGACTAAGCTGGGCCTAAACTCCCACACAGATAAGAACATTGTCACTATTCTGCACCAAAACCAAGTTGAAGGACTAGAGGTGCAAACCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

65

Amino Acids

7.41

Weight (kDa)

6.82

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	25 - 63	4.6e-07	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	15, 112
AluI	AGCT	2 cut(s)	15, 112
AoxI	GGCC	2 cut(s)	88, 115
ApaI	GGGCCC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	88, 89, 115
BaeGI	GKGCMC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	88, 89, 115
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	35
BpmI	CTGGAG	2 cut(s)	29, 56
BpuEI	CTTGAG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	92
BseYI	CCCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	90, 117
BslFI	GGGAC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	90, 117
Bsp120I	GGGCCC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	92
BspANI	GGCC	2 cut(s)	90, 117
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	90, 117
CciI	TCATGA	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	88, 89, 115
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	5 cut(s)	15, 90, 102, 112, 117
CviKI_1	RGCY	5 cut(s)	15, 90, 102, 112, 117
DdeI	CTNAG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	88, 89
EcoRII	CCWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	92
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	47, 77, 84
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	179
GsaI	CCCAGC	1 cut(s)	116
GsuI	CTGGAG	2 cut(s)	29, 56
HaeIII	GGCC	2 cut(s)	90, 117
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	4, 72
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	8, 76
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	74, 167
HpyCH4V	TGCA	2 cut(s)	157, 187
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	79
LpnPI	CCDG	5 cut(s)	20, 47, 98, 112, 116
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	3 cut(s)	31, 102, 175
MseI	TTAA	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	90
PspOMI	GGGCCC	1 cut(s)	88
PspPI	GGNCC	3 cut(s)	88, 89, 115
SaqAI	TTAA	1 cut(s)	196
Sau96I	GGNCC	3 cut(s)	88, 89, 115
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	5 cut(s)	17, 36, 66, 114, 186
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	70
TasI	AATT	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	92
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.