RchiOBHm_Chr2g0137361

citrate synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
55141333 .. 55143571
2239 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 153 bp
ATGGGATTTCCAACAGTGTTCTTCCCAGTTTTGTTTGCTATCTTTCAAGTTCTTCCCACTTCTGGTCATGCTATTTCTCAGCTATTCGATCTTTCTGTTATTCAGGTACATATTGGGGAGTGGCTGCGACACTATTTGCCATTGAAAGAATAG

Protein Analysis

50

Amino Acids

5.74

Weight (kDa)

6.23

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 2 cut(s) 47, 145
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 111
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 62
Bsp143I GATC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 91
BsrI ACTGG 1 cut(s) 26
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 78
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 21
Csp6I GTAC 1 cut(s) 107
CviAII CATG 1 cut(s) 68
CviJI RGCY 2 cut(s) 82, 124
CviKI_1 RGCY 2 cut(s) 82, 124
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
FaeI CATG 1 cut(s) 71
FaiI YATR 2 cut(s) 69, 111
FatI CATG 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 1 cut(s) 71
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 39, 48, 89
Lsp1109I GCAGC 1 cut(s) 111
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 13, 44
MmeI TCCRAC 1 cut(s) 35
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 71
PkrI GCNGC 1 cut(s) 126
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 88
SetI ASST 2 cut(s) 84, 108
SgeI CNNG 5 cut(s) 38, 59, 75, 80, 116
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 87
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 124
TspRI CASTG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.