RchiOBHm_Chr2g0137711

TPR and ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
55498666 .. 55499881
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
ATGATACGAATCATTAGACTACATTGTTCTCTCTCGGAAAGAACATACAATCGAAATGTTTCTCGGTTTATAATTAGCTGCAAACAGGTTATCGTGTTACATTTTGCATGTGGCGGAGGTAACTCAACTGGAAGAGGTTTAATTGATATGGCTGATTTTGATGAGGATGAAACCCAATTCAAGGATATCCAAGATTCATTTCACAATATTCCTCCGAGTTGTTACCCACTTGTCATTACATTTCATAAGTTTCTGATGATGCTCGATGGAACATTGAGTAACTCATACTTTGAAAGATTCCTTGATGTGAAAGCTACTGTTGGCCATTTTAAGAGTTCGAGATCAGTTGCATTTCAGAGCTTTAGATTTGTGTTAATTCTACATATCAATTGTTTCAGGTTGATCTTGATCCTTCTGATTATTGGTTCTGGTGTGAGTACAGAAATTTGGACTACTTATGCTGCAAGGATTATGGTCATATCTATCATCCTAGTTGTTGTTTCTCAAATACCTCAAGTTCTCCACTTAAGTTCAGGTGGCCAAGGCCTTGCAATTTTAATTGCTCTCATTGTCTCCGTGATACTTACTATAGCTTATATCTTCTATGAGGTAACTGATTCATTAATCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

210

Amino Acids

23.6

Weight (kDa)

7.67

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 2 cut(s) 322, 538
AcsI RAATTY 1 cut(s) 444
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 1 cut(s) 181
AflII CTTAAG 1 cut(s) 526
AgsI TTSAA 2 cut(s) 181, 293
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 4 cut(s) 78, 314, 360, 593
AluI AGCT 4 cut(s) 78, 314, 360, 593
Alw26I GTCTC 1 cut(s) 577
AlwI GGATC 1 cut(s) 403
AoxI GGCC 3 cut(s) 322, 538, 544
ApeKI GCWGC 2 cut(s) 78, 461
ApoI RAATTY 1 cut(s) 444
AseI ATTAAT 1 cut(s) 623
Asp700I GAANNNNTTC 1 cut(s) 58
BalI TGGCCA 2 cut(s) 324, 540
BbvI GCAGC 2 cut(s) 65, 448
BccI CCATC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 577
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 1 cut(s) 588
BfrI CTTAAG 1 cut(s) 526
BisI GCNGC 2 cut(s) 79, 462
BlsI GCNGC 2 cut(s) 80, 463
BmsI GCATC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 498
BsaBI GATNNNNATC 2 cut(s) 8, 407
BsaJI CCNNGG 1 cut(s) 541
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 133
Bse8I GATNNNNATC 2 cut(s) 8, 407
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 2 cut(s) 172, 486
BseJI GATNNNNATC 2 cut(s) 8, 407
BseLI CCNNNNNNNGG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 65, 448
BshFI GGCC 3 cut(s) 324, 540, 546
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 577
BsnI GGCC 3 cut(s) 324, 540, 546
Bsp143I GATC 3 cut(s) 341, 402, 408
BspACI CCGC 1 cut(s) 114
BspANI GGCC 3 cut(s) 324, 540, 546
BspPI GGATC 1 cut(s) 403
BspTI CTTAAG 1 cut(s) 526
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 3 cut(s) 341, 402, 408
BssT1I CCWWGG 1 cut(s) 541
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 127
BstAFI CTTAAG 1 cut(s) 526
BstF5I GGATG 2 cut(s) 172, 486
BstKTI GATC 3 cut(s) 344, 405, 411
BstMAI GTCTC 1 cut(s) 577
BstMBI GATC 3 cut(s) 341, 402, 408
BstNSI RCATGY 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 588
BstV1I GCAGC 2 cut(s) 65, 448
BsuRI GGCC 3 cut(s) 324, 540, 546
BtsCI GGATG 2 cut(s) 172, 486
Csp6I GTAC 1 cut(s) 438
CviAII CATG 1 cut(s) 108
CviJI RGCY 8 cut(s) 78, 152, 314, 324, 360, 540, 546, 593
CviKI_1 RGCY 8 cut(s) 78, 152, 314, 324, 360, 540, 546, 593
CviQI GTAC 1 cut(s) 438
DpnI GATC 3 cut(s) 343, 404, 410
DpnII GATC 3 cut(s) 341, 402, 408
EaeI YGGCCR 2 cut(s) 322, 538
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 541
Eco147I AGGCCT 1 cut(s) 546
Eco32I GATATC 1 cut(s) 187
EcoRV GATATC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 1 cut(s) 111
FatI CATG 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 79, 462
FokI GGATG 2 cut(s) 179, 473
Fsp4HI GCNGC 2 cut(s) 79, 462
FspBI CTAG 1 cut(s) 491
GluI GCNGC 2 cut(s) 79, 462
HaeIII GGCC 3 cut(s) 324, 540, 546
Hin1II CATG 1 cut(s) 111
HinfI GANTC 4 cut(s) 9, 194, 297, 617
Hpy188I TCNGA 5 cut(s) 37, 216, 255, 357, 417
Hpy188III TCNNGA 2 cut(s) 339, 406
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 5 cut(s) 81, 107, 350, 464, 551
Hsp92II CATG 1 cut(s) 111
Kzo9I GATC 3 cut(s) 341, 402, 408
LpnPI CCDG 5 cut(s) 71, 114, 382, 414, 519
Lsp1109I GCAGC 2 cut(s) 65, 448
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 5 cut(s) 96, 119, 221, 278, 610
MalI GATC 3 cut(s) 343, 404, 410
MboI GATC 3 cut(s) 341, 402, 408
MboII GAAGA 2 cut(s) 144, 592
MfeI CAATTG 1 cut(s) 388
MlsI TGGCCA 2 cut(s) 324, 540
MluCI AATT 8 cut(s) 72, 141, 176, 375, 388, 444, 552, 558
MluNI TGGCCA 2 cut(s) 324, 540
MnlI CCTC 6 cut(s) 110, 128, 157, 222, 522, 601
Mox20I TGGCCA 2 cut(s) 324, 540
MroXI GAANNNNTTC 1 cut(s) 58
MscI TGGCCA 2 cut(s) 324, 540
MseI TTAA 6 cut(s) 140, 330, 374, 527, 557, 623
Msp20I TGGCCA 2 cut(s) 324, 540
MspCI CTTAAG 1 cut(s) 526
MunI CAATTG 1 cut(s) 388
NdeII GATC 3 cut(s) 341, 402, 408
NlaIII CATG 1 cut(s) 111
NspI RCATGY 1 cut(s) 111
PceI AGGCCT 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 4 cut(s) 9, 194, 297, 617
PkrI GCNGC 2 cut(s) 80, 463
PshBI ATTAAT 1 cut(s) 623
PsiI TTATAA 1 cut(s) 71
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
SaqAI TTAA 6 cut(s) 140, 330, 374, 527, 557, 623
SatI GCNGC 2 cut(s) 79, 462
Sau3AI GATC 3 cut(s) 341, 402, 408
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 588
SmlI CTYRAG 2 cut(s) 513, 526
SmoI CTYRAG 2 cut(s) 513, 526
Sse9I AATT 8 cut(s) 72, 141, 176, 375, 388, 444, 552, 558
SseBI AGGCCT 1 cut(s) 546
SsiI CCGC 1 cut(s) 114
SspI AATATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 491
StuI AGGCCT 1 cut(s) 546
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 52, 264, 338
TasI AATT 8 cut(s) 72, 141, 176, 375, 388, 444, 552, 558
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 4 cut(s) 9, 194, 297, 617
Tru1I TTAA 6 cut(s) 140, 330, 374, 527, 557, 623
Tru9I TTAA 6 cut(s) 140, 330, 374, 527, 557, 623
TseI GCWGC 2 cut(s) 78, 461
TspDTI ATGAA 4 cut(s) 183, 186, 233, 609
TspGWI ACGGA 1 cut(s) 565
Vha464I CTTAAG 1 cut(s) 526
VspI ATTAAT 1 cut(s) 623
XapI RAATTY 1 cut(s) 444
XceI RCATGY 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.