RchiOBHm_Chr2g0140611

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
58111499 .. 58112798
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
ATGGCTCGTAATGGCGTCAAGTTCAATAAACCTGTTTGGTTCAAGGCTGGAGCCCAAATATTTAGTGAGGGTGGACTAGATTACTTAGGAAACCCAAGCTTAGTTCATGCACAAAGCATTTTGGCAATTTGGACGACGCAAGTTATCTTGATGGGCACAGTTGAAGGCTACAGAATTATCGGTGGGCCTCTCGGTAAGGTGATAGACCCACTATATCCAGGCGAGAGTTTTGATCCATTATGCCTTGCAGAAGATCCAGAGGCTTTTTTGCCGAGTTTAAGACAATCTGCAACCCTTATCATCTTGATTCTGTACGGGTCTGACCGTGTCAAGTACTTGGGTCCATTTTCTGGTGAGGCCCCCTCTTACCTTACTGGAGAATTCCTTGGTGACTATGGTTGGGATACCGCCAAACTTTCAGATGATCCCGAGACTTTGGCCAAGAACCGTGAGCTTGAAGTCATCCACTCAAGATGGGCCATGCCACCATGCTCGTTCGGCGAAGCTATTTGGTTCAAGGCCGGAGCCCAAATATTTAGTGAGGGTGGACTAGATTACTTAGGAAACCCAAGCTTAGTTCATGCTCAAAGCATTTTGGCAATTTGGGCGACGCAAGTTATCTTGATGGGCGCAGTTGAAGGCTACATAATTTTCGATGGACCTCTCGGTGAGGAGTTTAAGGTTAAGGAGCTCAAGAATGGAAGATTAGCCATGTTTTCCATGTTTGGATTTTTCATACAAGCCATTGTAACTGGAAAGGGACCGATAAAGAATTTGGCTGAACACTTAGCCGACCCTGTTAACAACAATGCCTGGTCATTTGCCACCAATGTGAAAGGTTTAAGATGGAGAAAAAACAGAGGAAAGAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

291

Amino Acids

32.0

Weight (kDa)

6.45

Isoelectric Point (pI)

27.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 120 - 249 1.1e-21 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 350
AciI CCGC 1 cut(s) 408
AclWI GGATC 3 cut(s) 227, 248, 419
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 2 cut(s) 380, 772
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 314, 335
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 6 cut(s) 25, 43, 164, 458, 517, 638
AjnI CCWGG 2 cut(s) 217, 812
AleI CACNNNNGTG 1 cut(s) 830
AluBI AGCT 5 cut(s) 99, 454, 506, 573, 691
AluI AGCT 5 cut(s) 99, 454, 506, 573, 691
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 3 cut(s) 227, 248, 419
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 5 cut(s) 185, 357, 438, 477, 519
ApoI RAATTY 2 cut(s) 380, 772
AspLEI GCGC 1 cut(s) 632
AspS9I GGNCC 6 cut(s) 185, 341, 358, 477, 659, 761
AsuHPI GGTGA 4 cut(s) 211, 365, 401, 680
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 3 cut(s) 341, 659, 761
BaeGI GKGCMC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 440
BanII GRGCYC 3 cut(s) 55, 529, 693
Bbv12I GWGCWC 1 cut(s) 693
BccI CCATC 5 cut(s) 145, 468, 619, 650, 840
BciT130I CCWGG 2 cut(s) 219, 814
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 2 cut(s) 77, 551
BfmI CTRYAG 1 cut(s) 169
BfuI GTATCC 1 cut(s) 397
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 219, 814
Bme18I GGWCC 3 cut(s) 341, 659, 761
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 6 cut(s) 185, 341, 358, 477, 659, 761
BmiI GGNNCC 5 cut(s) 52, 342, 360, 526, 762
BmrFI CCNGG 2 cut(s) 219, 814
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 2 cut(s) 69, 396
BpuEI CTTGAG 2 cut(s) 454, 677
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 379, 757
BseBI CCWGG 2 cut(s) 219, 814
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 350
BseNI ACTGG 2 cut(s) 379, 757
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 1 cut(s) 158
BshFI GGCC 5 cut(s) 187, 359, 440, 479, 521
BsiHKAI GWGCWC 1 cut(s) 693
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 774
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 774
BsnI GGCC 5 cut(s) 187, 359, 440, 479, 521
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 4 cut(s) 55, 158, 529, 693
Bsp143I GATC 3 cut(s) 232, 253, 424
BspACI CCGC 1 cut(s) 408
BspANI GGCC 5 cut(s) 187, 359, 440, 479, 521
BspLI GGNNCC 5 cut(s) 52, 342, 360, 526, 762
BspPI GGATC 3 cut(s) 227, 248, 419
BsrI ACTGG 2 cut(s) 379, 757
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 3 cut(s) 232, 253, 424
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 2 cut(s) 219, 814
Bst4CI ACNGT 3 cut(s) 160, 326, 449
BstACI GRCGYC 1 cut(s) 15
BstDEI CTNAG 5 cut(s) 85, 100, 559, 574, 787
BstF5I GGATG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 632
BstKTI GATC 3 cut(s) 235, 256, 427
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 3 cut(s) 232, 253, 424
BstMWI GCNNNNNNNGC 2 cut(s) 498, 605
BstNI CCWGG 2 cut(s) 219, 814
BstSCI CCNGG 2 cut(s) 217, 812
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 5 cut(s) 187, 359, 440, 479, 521
BtsCI GGATG 1 cut(s) 462
CfoI GCGC 1 cut(s) 632
Cfr13I GGNCC 6 cut(s) 185, 341, 358, 477, 659, 761
CseI GACGC 3 cut(s) 4, 145, 619
Csp6I GTAC 2 cut(s) 313, 334
CviAII CATG 6 cut(s) 107, 481, 489, 581, 712, 721
CviQI GTAC 2 cut(s) 313, 334
DdeI CTNAG 5 cut(s) 85, 100, 559, 574, 787
DpnI GATC 3 cut(s) 234, 255, 426
DpnII GATC 3 cut(s) 232, 253, 424
EaeI YGGCCR 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 691
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 3 cut(s) 55, 529, 693
Eco47I GGWCC 3 cut(s) 341, 659, 761
Eco53kI GAGCTC 1 cut(s) 691
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 217, 812
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 3 cut(s) 55, 529, 693
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 6 cut(s) 110, 484, 492, 584, 715, 724
FaqI GGGAC 1 cut(s) 774
FatI CATG 6 cut(s) 106, 480, 488, 580, 711, 720
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 3 cut(s) 55, 529, 693
FspBI CTAG 2 cut(s) 77, 551
GlaI GCGC 1 cut(s) 631
GsuI CTGGAG 2 cut(s) 69, 396
HaeIII GGCC 5 cut(s) 187, 359, 440, 479, 521
HapII CCGG 1 cut(s) 522
HgaI GACGC 3 cut(s) 4, 145, 619
HhaI GCGC 1 cut(s) 632
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 6 cut(s) 110, 484, 492, 584, 715, 724
Hin6I GCGC 1 cut(s) 630
HinP1I GCGC 1 cut(s) 630
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HindIII AAGCTT 2 cut(s) 97, 571
HinfI GANTC 1 cut(s) 307
HpaI GTTAAC 1 cut(s) 802
HpaII CCGG 1 cut(s) 522
HphI GGTGA 4 cut(s) 211, 365, 401, 680
Hpy166II GTNNAC 3 cut(s) 74, 548, 802
Hpy188I TCNGA 2 cut(s) 322, 421
Hpy188III TCNNGA 7 cut(s) 148, 257, 304, 428, 471, 622, 694
Hpy8I GTNNAC 3 cut(s) 74, 548, 802
Hpy99I CGWCG 2 cut(s) 139, 613
HpyAV CCTTC 2 cut(s) 158, 632
HpyCH4III ACNGT 3 cut(s) 160, 326, 449
HpyCH4V TGCA 3 cut(s) 110, 248, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 498, 605
HpyF3I CTNAG 5 cut(s) 85, 100, 559, 574, 787
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 6 cut(s) 110, 484, 492, 584, 715, 724
HspAI GCGC 1 cut(s) 630
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 3 cut(s) 232, 253, 424
LmnI GCTCC 3 cut(s) 50, 524, 688
MaeI CTAG 2 cut(s) 77, 551
MaeIII GTNAC 2 cut(s) 389, 748
MalI GATC 3 cut(s) 234, 255, 426
MboI GATC 3 cut(s) 232, 253, 424
MboII GAAGA 2 cut(s) 263, 714
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 4 cut(s) 55, 158, 529, 693
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 6 cut(s) 126, 174, 380, 600, 648, 772
MluNI TGGCCA 1 cut(s) 440
MnlI CCTC 9 cut(s) 61, 198, 253, 349, 373, 535, 664, 672, 854
Mox20I TGGCCA 1 cut(s) 440
MscI TGGCCA 1 cut(s) 440
MseI TTAA 5 cut(s) 278, 678, 684, 801, 842
MslI CAYNNNNRTG 1 cut(s) 830
Msp20I TGGCCA 1 cut(s) 440
MspI CCGG 1 cut(s) 522
MspR9I CCNGG 2 cut(s) 219, 814
MvaI CCWGG 2 cut(s) 219, 814
MwoI GCNNNNNNNGC 2 cut(s) 498, 605
NdeII GATC 3 cut(s) 232, 253, 424
NlaIII CATG 6 cut(s) 110, 484, 492, 584, 715, 724
NlaIV GGNNCC 5 cut(s) 52, 342, 360, 526, 762
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 389
OliI CACNNNNGTG 1 cut(s) 830
PfeI GAWTC 1 cut(s) 307
PflFI GACNNNGTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 693
Psp6I CCWGG 2 cut(s) 217, 812
PspGI CCWGG 2 cut(s) 217, 812
PspN4I GGNNCC 5 cut(s) 52, 342, 360, 526, 762
PspPI GGNCC 6 cut(s) 185, 341, 358, 477, 659, 761
PsuI RGATCY 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 2 cut(s) 314, 335
RsaNI GTAC 2 cut(s) 313, 334
RseI CAYNNNNRTG 1 cut(s) 830
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 5 cut(s) 278, 678, 684, 801, 842
Sau3AI GATC 3 cut(s) 232, 253, 424
Sau96I GGNCC 6 cut(s) 185, 341, 358, 477, 659, 761
ScaI AGTACT 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 219, 814
SduI GDGCHC 4 cut(s) 55, 158, 529, 693
SfcI CTRYAG 1 cut(s) 169
SinI GGWCC 3 cut(s) 341, 659, 761
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 2 cut(s) 469, 692
SmoI CTYRAG 2 cut(s) 469, 692
Sse9I AATT 6 cut(s) 126, 174, 380, 600, 648, 772
SsiI CCGC 1 cut(s) 408
SspI AATATT 2 cut(s) 60, 534
SspMI CTAG 2 cut(s) 77, 551
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 217, 812
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 3 cut(s) 160, 326, 449
TaqI TCGA 1 cut(s) 654
TaqII GACCGA 1 cut(s) 778
TasI AATT 6 cut(s) 126, 174, 380, 600, 648, 772
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 5 cut(s) 278, 678, 684, 801, 842
Tru9I TTAA 5 cut(s) 278, 678, 684, 801, 842
TseFI GTSAC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 95, 569, 724
Tth111I GACNNNGTC 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 350
VpaK11BI GGWCC 3 cut(s) 341, 659, 761
XapI RAATTY 2 cut(s) 380, 772
XspI CTAG 2 cut(s) 77, 551
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.