Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024834

Physical Location & Seq

Genomic Coordinates Forward (+)

61075421 .. 61076349

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCATACAACTCAGCTGTACGTTCTCCAGAGACCATGTTTGGCGTCCAGGTATTTGGTGCTGAGCAGGATCAGGTGGAGGGAGAAAACAAGTCCGCCATGAAGTTGCAGAAAAGTTACTTCGACGTGTTGGGCCTTTGCTGCTCATCCGAAGTTGCTCTGGTGGAGAATATCTTGAAGCCTCTTAGTGGTGTTAAAGAGGTCTCTGTCATTCTCCCTTCTAAAACTGTCATTGTCGTCCATGATAGTCACCTCATTTCCCAGATTCAGATTGGTGAATACCTTCACTCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006950 GO:0008150 GO:0009506 GO:0009636 GO:0010035 GO:0010038 GO:0010043 GO:0015691 GO:0016020 GO:0030001 GO:0030054 GO:0031090 GO:0032025 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0061687 GO:0065007 GO:0065008 GO:0070838 GO:0071585 GO:0071944 GO:0072507 GO:0072511 GO:0097501 GO:0098588 GO:0098754 GO:0098771 GO:0098805 GO:1990170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

98

Amino Acids

10.71

Weight (kDa)

5.2

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024834)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143401
rosa_multiflora	Rmu_sc0041599.1_g000001
rosa_samantha	Rh2DG452300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	26, 208
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	242, 287
BbvI	GCAGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	26, 208
BisI	GCNGC	1 cut(s)	142
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	2 cut(s)	26, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	27, 54
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	26, 208
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	2 cut(s)	26, 208
Bsp143I	GATC	1 cut(s)	70
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	2 cut(s)	26, 55
BspPI	GGATC	1 cut(s)	78
BspTNI	GGTCTC	2 cut(s)	26, 208
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	45
BstDEI	CTNAG	4 cut(s)	13, 63, 185, 289
BstF5I	GGATG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	2 cut(s)	26, 208
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	133
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	3 cut(s)	37, 100, 242
CviJI	RGCY	3 cut(s)	17, 135, 181
CviKI_1	RGCY	3 cut(s)	17, 135, 181
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	4 cut(s)	13, 63, 185, 289
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	85
Eco31I	GGTCTC	2 cut(s)	26, 208
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	40, 103, 245
FaiI	YATR	5 cut(s)	7, 38, 101, 243, 295
FatI	CATG	3 cut(s)	36, 99, 241
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	135
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	40, 103, 245
HinfI	GANTC	1 cut(s)	265
HphI	GGTGA	2 cut(s)	242, 287
Hpy188I	TCNGA	2 cut(s)	151, 270
Hpy188III	TCNNGA	2 cut(s)	29, 175
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	228, 293
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	22, 126
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	4 cut(s)	13, 63, 185, 289
HpySE526I	ACGT	2 cut(s)	22, 126
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	40, 103, 245
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	35, 42, 53, 59, 62, 146, 275
Lsp1109I	GCAGC	1 cut(s)	128
MaeII	ACGT	2 cut(s)	22, 126
MaeIII	GTNAC	2 cut(s)	116, 248
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	73, 192, 193, 263
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	141
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	40, 103, 245
NmuCI	GTSAC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	8 cut(s)	19, 25, 54, 78, 129, 204, 255, 285
SsiI	CCGC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	2 cut(s)	25, 129
TaqI	TCGA	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.