Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

61180671 .. 61183614

Gene Structure 2944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCCATGATGATAACCTCTCTTTGGGAATTCTGCGTTCTTTCACTTTTGCTTTCTTATGTTGTTGAGCTGGAAGCTTCCCACCATGTCTATAGCAATATTCAAACTTCTGAACTGACTTCGACTCGTCACCAAACTAAAGAGCCTTACAGAACTGGTTATCATTTCCAGCCTCCCAAGAATTGGATCAACGATCCTAACGTTGATCTAATGAGAACATCTACAATAGCTAGAACACAATTGTGGAAGATGGATGCTGCGCATTCTACATCAACTTATCTTCTTAATTGGACCCCTCATGATGATGCCATCTACCCATCACAGTTGTTTGATATCAATGGTTGTTGGTCGGGGTCAGCTACAATCCTTTCTGGGGGTAAGCCGGCTATTTTCTATACTGGAATCAACCCCCAGAACAAGCAAGCTCAAAACCTGGCCTTCCCCAAAAACCTCTCAGACCCATTTCTTAAGGAATGGGTAAAGATCCCACAGAACCCATTAATGAAGGCAACCCGAGCTAATCATATAAATGCAACCTCATTTAGGGACCCAACTACTGCTTGGCTAGGGTCAGATAATAGATGGAGATTAATCGGTGGAAGCCAGAAGAACCAAACAGGATCAGCTATCTTATATAGAAGTAAAGATTTCTTGAATTGGACCAAGGTCAATCACCCACTTCATTCAGCAAAGAAAACCGGAATGTGGGAGTGTCCAGATTTTTTTTCCAGTTTCAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0016020 GO:0016787 GO:0016798 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0080167 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

247

Amino Acids

28.24

Weight (kDa)

9.07

Isoelectric Point (pI)

28.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_32N	PF00251	55 - 243	6.6e-47	Glycosyl hydrolases family 32 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	183
AclI	AACGTT	1 cut(s)	201
AclWI	GGATC	4 cut(s)	188, 194, 478, 628
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	29
AfiI	CCNNNNNNNGG	5 cut(s)	24, 183, 373, 543, 705
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	104, 655, 736
AjnI	CCWGG	1 cut(s)	432
AleI	CACNNNNGTG	1 cut(s)	241
AluBI	AGCT	7 cut(s)	70, 77, 230, 359, 425, 518, 626
AluI	AGCT	7 cut(s)	70, 77, 230, 359, 425, 518, 626
AlwI	GGATC	4 cut(s)	188, 194, 478, 628
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	3, 435
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	29
AseI	ATTAAT	2 cut(s)	500, 590
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	3 cut(s)	291, 547, 660
AsuHPI	GGTGA	2 cut(s)	122, 665
AvaI	CYCGRG	1 cut(s)	513
AvaII	GGWCC	3 cut(s)	291, 547, 660
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	4 cut(s)	244, 317, 325, 576
BciT130I	CCWGG	1 cut(s)	434
BfaI	CTAG	2 cut(s)	231, 566
BfmI	CTRYAG	1 cut(s)	91
BfrI	CTTAAG	1 cut(s)	467
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	3 cut(s)	291, 547, 660
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	3 cut(s)	291, 547, 660
BmiI	GGNNCC	3 cut(s)	293, 548, 549
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	244, 295
BoxI	GACNNNNGTC	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	663
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 183, 373, 543, 705
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	3 cut(s)	160, 403, 729
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	663
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	5 cut(s)	24, 183, 373, 543, 705
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	3 cut(s)	160, 403, 729
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	2 cut(s)	5, 437
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	2 cut(s)	383, 699
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	5 cut(s)	24, 183, 373, 543, 705
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	5, 437
BsoBI	CYCGRG	1 cut(s)	513
Bsp143I	GATC	5 cut(s)	186, 193, 205, 483, 620
BspANI	GGCC	2 cut(s)	5, 437
BspCNI	CTCAG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	293, 548, 549
BspPI	GGATC	4 cut(s)	188, 194, 478, 628
BspTI	CTTAAG	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	160, 403, 729
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	5 cut(s)	186, 193, 205, 483, 620
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	384, 423
BstDEI	CTNAG	1 cut(s)	454
BstENI	CCTNNNNNAGG	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	5 cut(s)	189, 196, 208, 486, 623
BstMBI	GATC	5 cut(s)	186, 193, 205, 483, 620
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	1 cut(s)	434
BstPAI	GACNNNNGTC	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	5, 437
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	384, 423
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	3 cut(s)	291, 547, 660
CviAII	CATG	3 cut(s)	7, 86, 299
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	5 cut(s)	188, 195, 207, 485, 622
DpnII	GATC	5 cut(s)	186, 193, 205, 483, 620
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	663
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	3 cut(s)	291, 547, 660
Eco88I	CYCGRG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	3 cut(s)	10, 89, 302
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	3 cut(s)	6, 85, 298
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	231, 566
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	5, 437
HapII	CCGG	2 cut(s)	383, 699
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	3 cut(s)	10, 89, 302
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	2 cut(s)	124, 402
HpaII	CCGG	2 cut(s)	383, 699
HphI	GGTGA	2 cut(s)	122, 665
Hpy188I	TCNGA	3 cut(s)	112, 457, 574
Hpy188III	TCNNGA	3 cut(s)	299, 652, 716
HpyAV	CCTTC	2 cut(s)	448, 499
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	1 cut(s)	454
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	10, 89, 302
HspAI	GCGC	1 cut(s)	260
KflI	GGGWCCC	1 cut(s)	547
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	186, 193, 205, 483, 620
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	2 cut(s)	244, 295
MaeI	CTAG	2 cut(s)	231, 566
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	5 cut(s)	188, 195, 207, 485, 622
MboI	GATC	5 cut(s)	186, 193, 205, 483, 620
MboII	GAAGA	3 cut(s)	259, 272, 619
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	1 cut(s)	483
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	29, 181, 239, 286, 655
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	5 cut(s)	28, 183, 306, 461, 547
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	285, 468, 500, 590
MslI	CAYNNNNRTG	3 cut(s)	241, 303, 528
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	2 cut(s)	383, 699
MspR9I	CCNGG	1 cut(s)	434
MunI	CAATTG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	515
NaeI	GCCGGC	1 cut(s)	384
NdeII	GATC	5 cut(s)	186, 193, 205, 483, 620
NgoMIV	GCCGGC	1 cut(s)	382
NlaIII	CATG	3 cut(s)	10, 89, 302
NlaIV	GGNNCC	3 cut(s)	293, 548, 549
NmuCI	GTSAC	1 cut(s)	128
NsbI	TGCGCA	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	241
PagI	TCATGA	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	262
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	402
PflMI	CCANNNNNTGG	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	547
PshAI	GACNNNNGTC	1 cut(s)	665
PshBI	ATTAAT	2 cut(s)	500, 590
Psp1406I	AACGTT	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	3 cut(s)	293, 548, 549
PspPI	GGNCC	3 cut(s)	291, 547, 660
PspPPI	RGGWCCY	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	483
RseI	CAYNNNNRTG	3 cut(s)	241, 303, 528
SaqAI	TTAA	4 cut(s)	285, 468, 500, 590
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	5 cut(s)	186, 193, 205, 483, 620
Sau96I	GGNCC	3 cut(s)	291, 547, 660
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	434
SfaNI	GCATC	2 cut(s)	244, 295
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	3 cut(s)	291, 547, 660
SmiMI	CAYNNNNRTG	3 cut(s)	241, 303, 528
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	5 cut(s)	29, 181, 239, 286, 655
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	2 cut(s)	231, 566
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	122
TasI	AATT	5 cut(s)	29, 181, 239, 286, 655
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	4 cut(s)	285, 468, 500, 590
Tru9I	TTAA	4 cut(s)	285, 468, 500, 590
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	518, 671
Van91I	CCANNNNNTGG	1 cut(s)	183
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	3 cut(s)	291, 547, 660
VspI	ATTAAT	2 cut(s)	500, 590
XagI	CCTNNNNNAGG	1 cut(s)	541
XapI	RAATTY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XspI	CTAG	2 cut(s)	231, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.