Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

63605758 .. 63607504

Gene Structure 1747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAACTTTTCAGCAACAAACACCTACAGTCACATGAATACATAAGAGAAGAAATGAGTGCTTTGCTTAGAGGCTTGTATGAGTCCTCCAACACTAACATTTTGCTCAAAGACCACTTCTCCACTGTGAGTCTCAATGTCATAAGCATAATGGTGCTTGGAAAGAAGTACACGGACGAGTCCAAGGATGCGATAGTGAGCCCCGATGAGTTCAAGAAATTGCTTGATGAGCTGTTCTTGCTGAGTGAGGTGTTGAATATTGGTGATTTCAGTCCTTGGCTTGACTTCTTGGACTTGCAGGGGTATATAAAGCGAATGAAGGCTTTAAGCAAGAAGTTGGACAGGTTCTTGGAGCATGTGTTGGATGAGCATATTGAAAATAAGAAGGCAAAAGGCTTTGTAGCAACAGATATCGTGGATGTGCTTTTGCAGCTTGCTGATGATCCCGACCTTGTAGTTAAGCTTGAGGGGCATGGGATCAAGGGCTTTACGCAGGACCTAATTGCTGGTGGGACAGAGAGCTCAGCCGTGACAGTGGAGTGGGCAATTTCGGAGCTTCTAAGAAAGCCAGAGATTTTCAGGAAGGCAACCGAGGAGCTAGACAGGGTGATTGGAAGGGAAAGATGGGTGGAAGAGAGAGACATTGTTCACTTGCCATTCATTGATGCCATTGCCAAGGAAACCATGAGGCTTCACCCTGTGGCACCCCTGTTGGTGCCAAGACTAGCACGTGAGGATTGCCAAGTTGCTGGTTATAACATTCCTAAGGGCAACAGAGTCCTAGTGAGTGTGTGGACAATAGGAAGACACCCTAACTTGTGGGACAATCCCAATGAGTTCTGCCCAGAAAGGTTCATTGGCAAGGACATTGATGTCAACGGCCAAGACTTTGAGCTGTTGCCATTTGGGTCAGGAAGGAGGATGTGCCCTGGTTACAGTCTTGGCATTAAGGTTATTCAATCAAGTCTGGCTAATATCTTACATGGGTTCACATGGAGATTGCTTGGGAACATGAAGAAAGAGGATTTGAGTATGGAGGAAAATTTTGGGCTTTCAACACCCAGGAAGTTTCCCCTTGTTGCAGTCACTGAGTCTCGTCTTCCACCTTATCTTTACTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

374

Amino Acids

42.63

Weight (kDa)

5.58

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 353	1.6e-69	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AasI	GACNNNNNNGTC	1 cut(s)	872
AccB1I	GGYRCC	2 cut(s)	703, 715
AclWI	GGATC	2 cut(s)	437, 485
AcoI	YGGCCR	1 cut(s)	880
AcsI	RAATTY	1 cut(s)	1042
AcvI	CACGTG	1 cut(s)	731
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	214, 256, 377, 959, 1056
AjnI	CCWGG	2 cut(s)	928, 1061
AjuI	GAANNNNNNNTTGG	2 cut(s)	840, 872
AluBI	AGCT	7 cut(s)	232, 433, 463, 522, 556, 598, 895
AluI	AGCT	7 cut(s)	232, 433, 463, 522, 556, 598, 895
Alw21I	GWGCWC	1 cut(s)	524
Alw26I	GTCTC	3 cut(s)	137, 633, 1098
AlwI	GGATC	2 cut(s)	437, 485
AlwNI	CAGNNNCTG	1 cut(s)	1088
AoxI	GGCC	1 cut(s)	880
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	1 cut(s)	1042
AspS9I	GGNCC	1 cut(s)	496
AsuHPI	GGTGA	3 cut(s)	275, 619, 686
AvaII	GGWCC	1 cut(s)	496
AxyI	CCTNAGG	1 cut(s)	765
BaeGI	GKGCMC	1 cut(s)	929
BanI	GGYRCC	2 cut(s)	703, 715
BanII	GRGCYC	2 cut(s)	203, 524
BbrPI	CACGTG	1 cut(s)	731
BbsI	GAAGAC	2 cut(s)	811, 1091
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	618
BceAI	ACGGC	2 cut(s)	512, 895
BciT130I	CCWGG	2 cut(s)	930, 1063
BcoDI	GTCTC	3 cut(s)	137, 633, 1098
BfaI	CTAG	3 cut(s)	599, 725, 782
BfmI	CTRYAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	431
BlpI	GCTNAGC	1 cut(s)	523
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	930, 1063
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	2 cut(s)	705, 717
BmrFI	CCNGG	2 cut(s)	930, 1063
BmsI	GCATC	2 cut(s)	178, 655
BpiI	GAAGAC	2 cut(s)	811, 1091
Bpu1102I	GCTNAGC	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	731
BsaJI	CCNNGG	6 cut(s)	183, 275, 591, 675, 928, 1061
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 344, 374
Bse21I	CCTNAGG	1 cut(s)	765
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	930, 1063
BseDI	CCNNGG	6 cut(s)	183, 275, 591, 675, 928, 1061
BseGI	GGATG	4 cut(s)	193, 370, 424, 927
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	3 cut(s)	233, 537, 1080
BseRI	GAGGAG	1 cut(s)	608
BseSI	GKGCMC	1 cut(s)	929
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	1 cut(s)	882
BshNI	GGYRCC	2 cut(s)	703, 715
BsiHKAI	GWGCWC	1 cut(s)	524
BslFI	GGGAC	2 cut(s)	526, 836
BsmAI	GTCTC	3 cut(s)	137, 633, 1098
BsmFI	GGGAC	2 cut(s)	526, 836
BsnI	GGCC	1 cut(s)	882
Bsp1286I	GDGCHC	3 cut(s)	203, 524, 929
Bsp143I	GATC	2 cut(s)	442, 477
Bsp1720I	GCTNAGC	1 cut(s)	523
BspANI	GGCC	1 cut(s)	882
BspCNI	CTCAG	3 cut(s)	234, 536, 1081
BspLI	GGNNCC	2 cut(s)	705, 717
BspPI	GGATC	2 cut(s)	437, 485
BspT107I	GGYRCC	2 cut(s)	703, 715
BsrDI	GCAATG	1 cut(s)	669
BssECI	CCNNGG	6 cut(s)	183, 275, 591, 675, 928, 1061
BssMI	GATC	2 cut(s)	442, 477
BssT1I	CCWWGG	3 cut(s)	183, 275, 675
Bst2UI	CCWGG	2 cut(s)	930, 1063
Bst4CI	ACNGT	4 cut(s)	30, 127, 535, 938
Bst6I	CTCTTC	1 cut(s)	627
BstBAI	YACGTR	1 cut(s)	731
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	6 cut(s)	68, 242, 523, 560, 765, 1089
BstF5I	GGATG	4 cut(s)	193, 370, 424, 927
BstKTI	GATC	2 cut(s)	445, 480
BstMAI	GTCTC	3 cut(s)	137, 633, 1098
BstMBI	GATC	2 cut(s)	442, 477
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 238, 430, 469
BstNI	CCWGG	2 cut(s)	930, 1063
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	928, 1061
BstSFI	CTRYAG	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	929
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	2 cut(s)	811, 1091
BstXI	CCANNNNNNTGG	1 cut(s)	749
Bsu36I	CCTNAGG	1 cut(s)	765
BsuRI	GGCC	1 cut(s)	882
BtsCI	GGATG	4 cut(s)	193, 370, 424, 927
BtsIMutI	CAGTG	3 cut(s)	123, 540, 1086
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	1088
Cfr13I	GGNCC	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	7 cut(s)	35, 356, 473, 685, 983, 993, 1012
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	6 cut(s)	68, 242, 523, 560, 765, 1089
DpnI	GATC	2 cut(s)	444, 479
DpnII	GATC	2 cut(s)	442, 477
DraIII	CACNNNGTG	1 cut(s)	700
DrdI	GACNNNNNNGTC	1 cut(s)	872
DseDI	GACNNNNNNGTC	1 cut(s)	872
EaeI	YGGCCR	1 cut(s)	880
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Ecl136II	GAGCTC	1 cut(s)	522
Eco130I	CCWWGG	3 cut(s)	183, 275, 675
Eco24I	GRGCYC	2 cut(s)	203, 524
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	496
Eco53kI	GAGCTC	1 cut(s)	522
Eco72I	CACGTG	1 cut(s)	731
Eco81I	CCTNAGG	1 cut(s)	765
EcoICRI	GAGCTC	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	928, 1061
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	3 cut(s)	183, 275, 675
EcoT38I	GRGCYC	2 cut(s)	203, 524
ErhI	CCWWGG	3 cut(s)	183, 275, 675
FaeI	CATG	7 cut(s)	38, 359, 476, 688, 986, 996, 1015
FaqI	GGGAC	2 cut(s)	526, 836
FatI	CATG	7 cut(s)	34, 355, 472, 684, 982, 992, 1011
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	4 cut(s)	200, 377, 431, 934
FriOI	GRGCYC	2 cut(s)	203, 524
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	3 cut(s)	599, 725, 782
GluI	GCNGC	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	882
Hin1II	CATG	7 cut(s)	38, 359, 476, 688, 986, 996, 1015
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	5 cut(s)	83, 130, 179, 777, 1091
HphI	GGTGA	3 cut(s)	275, 619, 686
Hpy166II	GTNNAC	5 cut(s)	171, 649, 795, 877, 990
Hpy188I	TCNGA	1 cut(s)	553
Hpy188III	TCNNGA	4 cut(s)	214, 446, 580, 912
Hpy8I	GTNNAC	5 cut(s)	171, 649, 795, 877, 990
HpyAV	CCTTC	5 cut(s)	313, 379, 577, 609, 909
HpyCH4III	ACNGT	4 cut(s)	30, 127, 535, 938
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	3 cut(s)	298, 430, 1082
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 238, 430, 469
HpyF3I	CTNAG	6 cut(s)	68, 242, 523, 560, 765, 1089
HpySE526I	ACGT	1 cut(s)	730
Hsp92II	CATG	7 cut(s)	38, 359, 476, 688, 986, 996, 1015
Kzo9I	GATC	2 cut(s)	442, 477
LmnI	GCTCC	3 cut(s)	352, 553, 595
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	2 cut(s)	178, 655
MaeI	CTAG	3 cut(s)	599, 725, 782
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	4 cut(s)	30, 529, 932, 1084
MalI	GATC	2 cut(s)	444, 479
MboI	GATC	2 cut(s)	442, 477
MboII	GAAGA	5 cut(s)	62, 644, 816, 1027, 1091
MhlI	GDGCHC	3 cut(s)	203, 524, 929
MluCI	AATT	4 cut(s)	218, 501, 546, 1042
MlyI	GAGTC	5 cut(s)	92, 139, 188, 786, 1100
MmeI	TCCRAC	3 cut(s)	114, 318, 342
MseI	TTAA	3 cut(s)	326, 459, 948
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	930, 1063
MvaI	CCWGG	2 cut(s)	930, 1063
MwoI	GCNNNNNNNGC	4 cut(s)	229, 238, 430, 469
NdeII	GATC	2 cut(s)	442, 477
NlaIII	CATG	7 cut(s)	38, 359, 476, 688, 986, 996, 1015
NlaIV	GGNNCC	2 cut(s)	705, 717
NmuCI	GTSAC	3 cut(s)	30, 529, 1084
NspI	RCATGY	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	5 cut(s)	91, 138, 187, 785, 1099
PmaCI	CACGTG	1 cut(s)	731
PmlI	CACGTG	1 cut(s)	731
PpsI	GAGTC	5 cut(s)	91, 138, 187, 785, 1099
Ppu21I	YACGTR	1 cut(s)	731
PpuMI	RGGWCCY	1 cut(s)	496
PsiI	TTATAA	1 cut(s)	756
Psp124BI	GAGCTC	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	496
Psp6I	CCWGG	2 cut(s)	928, 1061
PspCI	CACGTG	1 cut(s)	731
PspGI	CCWGG	2 cut(s)	928, 1061
PspN4I	GGNNCC	2 cut(s)	705, 717
PspPI	GGNCC	1 cut(s)	496
PspPPI	RGGWCCY	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	1088
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	524
SaqAI	TTAA	3 cut(s)	326, 459, 948
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	2 cut(s)	442, 477
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	5 cut(s)	92, 139, 188, 786, 1100
ScrFI	CCNGG	2 cut(s)	930, 1063
SduI	GDGCHC	3 cut(s)	203, 524, 929
SfaNI	GCATC	2 cut(s)	178, 655
SfcI	CTRYAG	1 cut(s)	26
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	4 cut(s)	218, 501, 546, 1042
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	3 cut(s)	599, 725, 782
SstI	GAGCTC	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	928, 1061
StyI	CCWWGG	3 cut(s)	183, 275, 675
TaaI	ACNGT	4 cut(s)	30, 127, 535, 938
TaiI	ACGT	1 cut(s)	733
TasI	AATT	4 cut(s)	218, 501, 546, 1042
TatI	WGTACW	1 cut(s)	168
Tru1I	TTAA	3 cut(s)	326, 459, 948
Tru9I	TTAA	3 cut(s)	326, 459, 948
TscAI	CASTG	3 cut(s)	130, 540, 1093
TseFI	GTSAC	3 cut(s)	30, 529, 1084
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	3 cut(s)	30, 529, 1084
TspDTI	ATGAA	5 cut(s)	51, 332, 649, 844, 1028
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	3 cut(s)	130, 540, 1093
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	1 cut(s)	1042
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	3 cut(s)	599, 725, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.