RchiOBHm_Chr2g0148041

gamma-irradiation and mitomycin c induced

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
65636819 .. 65638360
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGATATTAGCTCAGTACTTAGGTAAAGATCATATGCTTCCTATTGTCTCTAGATCTTTTGAAGCTGCTGGTGCTTTTGAGGACTTTGTAGAGAGTGATTATGGGGAAGTTGATTGTATCCATCCACTCTGTGAACCAGCTGTGAACCAACTCTGCTTTACAGTCCTACACATGGTTGATCTTTTATTCTATGTCTGGAAGATATCAAGTAACATAAAACACTTCCTAATTACAATTGTTCTAGGATCTAGGGGACTGAAAAATGCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

90

Amino Acids

10.14

Weight (kDa)

5.36

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 253
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 62
AluBI AGCT 3 cut(s) 11, 65, 140
AluI AGCT 3 cut(s) 11, 65, 140
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 129
BciVI GTATCC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 3 cut(s) 51, 242, 249
BfuI GTATCC 1 cut(s) 128
BglII AGATCT 1 cut(s) 53
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 52
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 267
Bsp143I GATC 4 cut(s) 28, 53, 178, 245
BspCNI CTCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 253
BssMI GATC 4 cut(s) 28, 53, 178, 245
Bst4CI ACNGT 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 12, 19
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 4 cut(s) 31, 56, 181, 248
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 4 cut(s) 28, 53, 178, 245
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 53, 245
BstYI RGATCY 2 cut(s) 53, 245
BsuI GTATCC 1 cut(s) 128
BtsCI GGATG 1 cut(s) 121
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 172
CviJI RGCY 3 cut(s) 11, 65, 140
CviKI_1 RGCY 3 cut(s) 11, 65, 140
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 2 cut(s) 12, 19
DpnI GATC 4 cut(s) 30, 55, 180, 247
DpnII GATC 4 cut(s) 28, 53, 178, 245
DraIII CACNNNGTG 1 cut(s) 131
Eco32I GATATC 1 cut(s) 204
EcoRV GATATC 1 cut(s) 204
FaeI CATG 1 cut(s) 175
FaiI YATR 7 cut(s) 33, 35, 102, 173, 192, 215, 271
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 171
FauNDI CATATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 3 cut(s) 51, 242, 249
GluI GCNGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 134, 145
Hpy188III TCNNGA 2 cut(s) 51, 196
Hpy8I GTNNAC 2 cut(s) 134, 145
HpyCH4III ACNGT 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 12, 19
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 4 cut(s) 28, 53, 178, 245
LpnPI CCDG 3 cut(s) 54, 150, 181
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 3 cut(s) 51, 242, 249
MaeIII GTNAC 1 cut(s) 209
MalI GATC 4 cut(s) 30, 55, 180, 247
MboI GATC 4 cut(s) 28, 53, 178, 245
MboII GAAGA 1 cut(s) 211
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 2 cut(s) 53, 245
MluCI AATT 2 cut(s) 228, 234
MnlI CCTC 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 140
MunI CAATTG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeI CATATG 1 cut(s) 33
NdeII GATC 4 cut(s) 28, 53, 178, 245
NlaIII CATG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 67
PsuI RGATCY 2 cut(s) 53, 245
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 4 cut(s) 28, 53, 178, 245
ScaI AGTACT 1 cut(s) 17
SetI ASST 4 cut(s) 13, 25, 67, 142
SgeI CNNG 8 cut(s) 63, 81, 149, 184, 208, 219, 254, 261
Sse9I AATT 2 cut(s) 228, 234
SspMI CTAG 3 cut(s) 51, 242, 249
TaaI ACNGT 1 cut(s) 163
TasI AATT 2 cut(s) 228, 234
TatI WGTACW 1 cut(s) 15
TseI GCWGC 1 cut(s) 65
XbaI TCTAGA 1 cut(s) 50
XspI CTAG 3 cut(s) 51, 242, 249
ZrmI AGTACT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.