RchiOBHm_Chr2g0148511

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
66272406 .. 66275215
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1497 bp
ATGATGTTCACCACATGTCTCAACTACTGTATGATGCGTATTCTTGGAGAAGGCACTGAGGGTGGTCGAGATAATGCATGTGCAAGGGCCCGGAAATGGATTCTTGACGGTGGTGATGCAAAATATTCTGCTTCATGGGGAAAGACCTGGATGGCGATACTTGGTGTTTATGATTGGGAAGGAAGTAACCCTATACCCCCGGAGTTCTGGACTTACCCCACTCTGCTTCCTTTTTATCCATCAAAGATGTTGTGCTACTGTAGGTTAACTTACCTACCCATATCCTACTTTTATGGAAAAAGATTTGTTGGCCTAATCACTCATCTGGTTGAACAATTGGGACAAGAAATTTACTGTGAACCTTACAGTGAAATTAAGTGGAGTAAAGTGTGCCATCATTGTACAAAGGCGAGTCTATATTTTGGTGGCTTAGAAGATAACTACTATCCTCAGGGAAGGGTACAACGTTTTGTGTGGGACACTCTTTACCATGTTTGTGAGCCTATTCTTGCTTGGTGGCCCTTTAAGAAGATCAGAGACAATGCTATTCAATTTACCATTGACCAAATCCATTATGAAGATGAGAACAGTCGCTACATTACCATTGGATCTCATTTCCGTCACATTTCCAAAGGATGCTGGACTTTCTCTTATCGGGATCATGGATGGCAAGTTTCAGATTGCACTGCAGAAGCATTGAGGGTAATTGAGCTTACTTATTCAAGACTCTCACTCAACTCAAATAGAAAGTTGAGAGCCTCATCTATAGCTGACCTTATAATCTTTTCGTTTCAGTGCTGCTGTCTGTTTGCAATGATGTCACCAGAGGTTGTTGGCGAGCCAATGGAAGCCGAGTGTATGTATGATGCTGTCAATGTCATAATGTCACTACAGAGTCCAAATGGTGGTTGGCTCAACCCCGTCGAATTTTTTGAGGATCTTGTCATTGAATATGATTACGTCAAGTGCACTTCATCTTCGATTCAGGCCTTAGTTTTGTTTAGGAAGTTGTATCCTAATCACAGAAGGAAAGAGATCAACAACTTCATCACAAGGGCTGCAAACTACATTGAAAGCATACAATACGCTGATGGCTCATGGTATGGAAACTGGGGGTTAGAGGCTGCAGGAAGAACCTACCACAATTGCAAGGCAGTTCGCAAAGGTGTTGACTTTTTGCTAAAAACACAAAGTCATGCACGAACAAGGTACTATTCTTCTACTACTGGTGAGAGAGATCCAACTCCTATTCACCGTGCTGCAAGGGTCTTGATGAACGGTCAGTTGGATGATGGTGATTTTCCCCAACAGGAACTGGTGGGAGTTTTCACGAGGAATACAATGTTACACTATGGAGGATATAGGAATGTTTTCCCATTGTGGGCTCGCGGAGAGTATCGTACGTACTCTGGAGCAGTTGCCTTAGCAAAAGGATTTGAATTAACCTTGACTCACAAGCAGAAGATCAATGGATGTAGAAAGAATAACTTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

498

Amino Acids

57.67

Weight (kDa)

8.41

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 3 - 188 8.1e-18 Squalene-hopene cyclase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 905
AccII CGCG 1 cut(s) 1389
AciI CCGC 1 cut(s) 1389
AclI AACGTT 1 cut(s) 466
AclWI GGATC 4 cut(s) 616, 666, 945, 1232
AcsI RAATTY 2 cut(s) 348, 926
AfaI GTAC 5 cut(s) 403, 462, 1211, 1402, 1406
AfiI CCNNNNNNNGG 3 cut(s) 96, 905, 1381
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 6 cut(s) 332, 551, 723, 950, 1073, 1439
AjnI CCWGG 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 1268, 1300
AluBI AGCT 2 cut(s) 712, 770
AluI AGCT 2 cut(s) 712, 770
Alw21I GWGCWC 1 cut(s) 971
Alw26I GTCTC 2 cut(s) 23, 531
Alw44I GTGCAC 1 cut(s) 967
AlwI GGATC 4 cut(s) 616, 666, 945, 1232
AlwNI CAGNNNCTG 1 cut(s) 1315
AoxI GGCC 4 cut(s) 87, 310, 518, 987
ApaI GGGCCC 1 cut(s) 91
ApaLI GTGCAC 1 cut(s) 967
ApeKI GCWGC 4 cut(s) 798, 1058, 1124, 1259
ApoI RAATTY 2 cut(s) 348, 926
Asp700I GAANNNNTTC 1 cut(s) 1370
AspS9I GGNCC 3 cut(s) 87, 88, 519
AsuC2I CCSGG 2 cut(s) 91, 200
AsuHPI GGTGA 5 cut(s) 125, 813, 1241, 1244, 1307
AxyI CCTNAGG 1 cut(s) 450
BaeGI GKGCMC 2 cut(s) 91, 971
BanII GRGCYC 2 cut(s) 91, 1387
BauI CACGAG 1 cut(s) 1330
Bbv12I GWGCWC 1 cut(s) 971
BbvI GCAGC 4 cut(s) 785, 1045, 1111, 1246
BccI CCATC 6 cut(s) 145, 247, 402, 660, 1085, 1286
BciT130I CCWGG 1 cut(s) 148
BciVI GTATCC 1 cut(s) 1023
BcnI CCSGG 2 cut(s) 91, 200
BcoDI GTCTC 2 cut(s) 23, 531
BfmI CTRYAG 5 cut(s) 259, 687, 765, 890, 1125
BfuI GTATCC 1 cut(s) 1023
BisI GCNGC 4 cut(s) 799, 1059, 1125, 1260
BlsI GCNGC 4 cut(s) 800, 1060, 1126, 1261
Bme1390I CCNGG 3 cut(s) 91, 148, 200
BmgT120I GGNCC 3 cut(s) 87, 88, 519
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 3 cut(s) 91, 148, 200
BmrI ACTGGG 1 cut(s) 1120
BmsI GCATC 4 cut(s) 24, 106, 626, 856
BmuI ACTGGG 1 cut(s) 1120
BpmI CTGGAG 1 cut(s) 1431
Bpu10I CCTNAGC 1 cut(s) 1423
BpuMI CCSGG 2 cut(s) 91, 200
BsaAI YACGTR 1 cut(s) 1404
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 905, 1381
Bse1I ACTGG 3 cut(s) 1115, 1231, 1320
Bse21I CCTNAGG 1 cut(s) 450
Bse3DI GCAATG 1 cut(s) 819
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 5 cut(s) 156, 641, 671, 1294, 1478
BseLI CCNNNNNNNGG 3 cut(s) 96, 905, 1381
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 2 cut(s) 48, 464
BseNI ACTGG 3 cut(s) 1115, 1231, 1320
BseSI GKGCMC 2 cut(s) 91, 971
BseXI GCAGC 4 cut(s) 785, 1045, 1111, 1246
Bsh1236I CGCG 1 cut(s) 1389
BshFI GGCC 4 cut(s) 89, 312, 520, 989
BsiHKAI GWGCWC 1 cut(s) 971
BsiSI CCGG 2 cut(s) 91, 200
BsiWI CGTACG 1 cut(s) 1400
BslFI GGGAC 2 cut(s) 354, 491
BslI CCNNNNNNNGG 3 cut(s) 96, 905, 1381
BsmAI GTCTC 2 cut(s) 23, 531
BsmFI GGGAC 2 cut(s) 354, 491
BsnI GGCC 4 cut(s) 89, 312, 520, 989
Bsp120I GGGCCC 1 cut(s) 87
Bsp1286I GDGCHC 3 cut(s) 91, 971, 1387
Bsp1407I TGTACA 1 cut(s) 401
Bsp143I GATC 7 cut(s) 531, 608, 658, 937, 1035, 1237, 1464
BspACI CCGC 1 cut(s) 1389
BspANI GGCC 4 cut(s) 89, 312, 520, 989
BspCNI CTCAG 2 cut(s) 49, 463
BspFNI CGCG 1 cut(s) 1389
BspLI GGNNCC 1 cut(s) 89
BspMAI CTGCAG 2 cut(s) 691, 1129
BspPI GGATC 4 cut(s) 616, 666, 945, 1232
BsrDI GCAATG 1 cut(s) 819
BsrGI TGTACA 1 cut(s) 401
BsrI ACTGG 3 cut(s) 1115, 1231, 1320
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 7 cut(s) 531, 608, 658, 937, 1035, 1237, 1464
BssSI CACGAG 1 cut(s) 1330
Bst2BI CACGAG 1 cut(s) 1330
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 8 cut(s) 29, 110, 260, 356, 368, 590, 1256, 1280
BstAUI TGTACA 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 1404
BstC8I GCNNGC 2 cut(s) 839, 1387
BstDEI CTNAG 5 cut(s) 57, 430, 450, 991, 1423
BstF5I GGATG 5 cut(s) 156, 641, 671, 1294, 1478
BstFNI CGCG 1 cut(s) 1389
BstKTI GATC 7 cut(s) 534, 611, 661, 940, 1038, 1240, 1467
BstMAI GTCTC 2 cut(s) 23, 531
BstMBI GATC 7 cut(s) 531, 608, 658, 937, 1035, 1237, 1464
BstNI CCWGG 1 cut(s) 148
BstNSI RCATGY 2 cut(s) 18, 81
BstSCI CCNGG 3 cut(s) 89, 146, 198
BstSFI CTRYAG 5 cut(s) 259, 687, 765, 890, 1125
BstSLI GKGCMC 2 cut(s) 91, 971
BstSNI TACGTA 1 cut(s) 1404
BstUI CGCG 1 cut(s) 1389
BstV1I GCAGC 4 cut(s) 785, 1045, 1111, 1246
BstX2I RGATCY 3 cut(s) 608, 937, 1237
BstYI RGATCY 3 cut(s) 608, 937, 1237
Bsu36I CCTNAGG 1 cut(s) 450
BsuI GTATCC 1 cut(s) 1023
BsuRI GGCC 4 cut(s) 89, 312, 520, 989
BtsCI GGATG 5 cut(s) 156, 641, 671, 1294, 1478
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 4 cut(s) 54, 373, 684, 800
Cac8I GCNNGC 2 cut(s) 839, 1387
CaiI CAGNNNCTG 1 cut(s) 1315
Cfr13I GGNCC 3 cut(s) 87, 88, 519
Csp6I GTAC 5 cut(s) 402, 461, 1210, 1401, 1405
CviAII CATG 7 cut(s) 15, 78, 135, 491, 662, 1098, 1196
CviQI GTAC 5 cut(s) 402, 461, 1210, 1401, 1405
DdeI CTNAG 5 cut(s) 57, 430, 450, 991, 1423
DpnI GATC 7 cut(s) 533, 610, 660, 939, 1037, 1239, 1466
DpnII GATC 7 cut(s) 531, 608, 658, 937, 1035, 1237, 1464
Eco105I TACGTA 1 cut(s) 1404
Eco147I AGGCCT 1 cut(s) 989
Eco24I GRGCYC 2 cut(s) 91, 1387
Eco81I CCTNAGG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 2 cut(s) 91, 1387
FaeI CATG 7 cut(s) 18, 81, 138, 494, 665, 1101, 1199
FalI AAGNNNNNCTT 1 cut(s) 1472
FaqI GGGAC 2 cut(s) 354, 491
FatI CATG 7 cut(s) 14, 77, 134, 490, 661, 1097, 1195
Fnu4HI GCNGC 4 cut(s) 799, 1059, 1125, 1260
FokI GGATG 5 cut(s) 163, 648, 678, 1301, 1485
FriOI GRGCYC 2 cut(s) 91, 1387
Fsp4HI GCNGC 4 cut(s) 799, 1059, 1125, 1260
GluI GCNGC 4 cut(s) 799, 1059, 1125, 1260
GsuI CTGGAG 1 cut(s) 1431
HaeIII GGCC 4 cut(s) 89, 312, 520, 989
HapII CCGG 2 cut(s) 91, 200
Hin1II CATG 7 cut(s) 18, 81, 138, 494, 665, 1101, 1199
HincII GTYRAC 2 cut(s) 267, 1171
HindII GTYRAC 2 cut(s) 267, 1171
HinfI GANTC 6 cut(s) 100, 412, 726, 895, 982, 1450
HpaI GTTAAC 1 cut(s) 267
HpaII CCGG 2 cut(s) 91, 200
HphI GGTGA 5 cut(s) 125, 813, 1241, 1244, 1307
Hpy166II GTNNAC 5 cut(s) 9, 267, 359, 969, 1171
Hpy188I TCNGA 2 cut(s) 536, 679
Hpy188III TCNNGA 8 cut(s) 68, 104, 208, 656, 723, 1270, 1330, 1410
Hpy8I GTNNAC 5 cut(s) 9, 267, 359, 969, 1171
Hpy99I CGWCG 1 cut(s) 926
HpyAV CCTTC 4 cut(s) 44, 173, 450, 1020
HpyCH4III ACNGT 8 cut(s) 29, 110, 260, 356, 368, 590, 1256, 1280
HpyCH4IV ACGT 3 cut(s) 466, 960, 1403
HpyF3I CTNAG 5 cut(s) 57, 430, 450, 991, 1423
HpySE526I ACGT 3 cut(s) 466, 960, 1403
Hsp92II CATG 7 cut(s) 18, 81, 138, 494, 665, 1101, 1199
KspAI GTTAAC 1 cut(s) 267
Kzo9I GATC 7 cut(s) 531, 608, 658, 937, 1035, 1237, 1464
LmnI GCTCC 1 cut(s) 1412
Lsp1109I GCAGC 4 cut(s) 785, 1045, 1111, 1246
LweI GCATC 4 cut(s) 24, 106, 626, 856
MaeII ACGT 3 cut(s) 466, 960, 1403
MaeIII GTNAC 5 cut(s) 185, 620, 819, 885, 1344
MalI GATC 7 cut(s) 533, 610, 660, 939, 1037, 1239, 1466
MboI GATC 7 cut(s) 531, 608, 658, 937, 1035, 1237, 1464
MboII GAAGA 7 cut(s) 446, 541, 590, 969, 1143, 1209, 1474
MfeI CAATTG 2 cut(s) 335, 1144
MflI RGATCY 3 cut(s) 608, 937, 1237
MhlI GDGCHC 3 cut(s) 91, 971, 1387
MluCI AATT 8 cut(s) 335, 348, 372, 551, 705, 926, 1144, 1439
MlyI GAGTC 4 cut(s) 421, 720, 904, 1444
MmeI TCCRAC 2 cut(s) 1265, 1266
MnlI CCTC 9 cut(s) 52, 459, 693, 769, 820, 928, 1114, 1326, 1349
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 1370
MseI TTAA 5 cut(s) 266, 375, 525, 1442, 1490
MslI CAYNNNNRTG 1 cut(s) 495
MspI CCGG 2 cut(s) 91, 200
MspR9I CCNGG 3 cut(s) 91, 148, 200
MunI CAATTG 2 cut(s) 335, 1144
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 1389
NciI CCSGG 2 cut(s) 91, 200
NdeII GATC 7 cut(s) 531, 608, 658, 937, 1035, 1237, 1464
NlaIII CATG 7 cut(s) 18, 81, 138, 494, 665, 1101, 1199
NlaIV GGNNCC 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 877
NmuCI GTSAC 3 cut(s) 620, 819, 885
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 2 cut(s) 18, 81
PceI AGGCCT 1 cut(s) 989
PciI ACATGT 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 1370
PfeI GAWTC 2 cut(s) 100, 982
Pfl23II CGTACG 1 cut(s) 1400
PflMI CCANNNNNTGG 1 cut(s) 905
PkrI GCNGC 4 cut(s) 800, 1060, 1126, 1261
PleI GAGTC 4 cut(s) 420, 720, 903, 1444
PpsI GAGTC 4 cut(s) 420, 720, 903, 1444
Ppu21I YACGTR 1 cut(s) 1404
PscI ACATGT 1 cut(s) 14
PsiI TTATAA 1 cut(s) 779
Psp1406I AACGTT 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspLI CGTACG 1 cut(s) 1400
PspN4I GGNNCC 1 cut(s) 89
PspOMI GGGCCC 1 cut(s) 87
PspPI GGNCC 3 cut(s) 87, 88, 519
PsrI GAACNNNNNNTAC 2 cut(s) 578, 610
PstI CTGCAG 2 cut(s) 691, 1129
PstNI CAGNNNCTG 1 cut(s) 1315
PsuI RGATCY 3 cut(s) 608, 937, 1237
RsaI GTAC 5 cut(s) 403, 462, 1211, 1402, 1406
RsaNI GTAC 5 cut(s) 402, 461, 1210, 1401, 1405
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 5 cut(s) 266, 375, 525, 1442, 1490
SatI GCNGC 4 cut(s) 799, 1059, 1125, 1260
Sau3AI GATC 7 cut(s) 531, 608, 658, 937, 1035, 1237, 1464
Sau96I GGNCC 3 cut(s) 87, 88, 519
SchI GAGTC 4 cut(s) 421, 720, 904, 1444
ScrFI CCNGG 3 cut(s) 91, 148, 200
SduI GDGCHC 3 cut(s) 91, 971, 1387
SfaNI GCATC 4 cut(s) 24, 106, 626, 856
SfcI CTRYAG 5 cut(s) 259, 687, 765, 890, 1125
SmiMI CAYNNNNRTG 1 cut(s) 495
SnaBI TACGTA 1 cut(s) 1404
Sse9I AATT 8 cut(s) 335, 348, 372, 551, 705, 926, 1144, 1439
SseBI AGGCCT 1 cut(s) 989
SsiI CCGC 1 cut(s) 1389
SspI AATATT 1 cut(s) 125
StuI AGGCCT 1 cut(s) 989
StyD4I CCNGG 3 cut(s) 89, 146, 198
TaaI ACNGT 8 cut(s) 29, 110, 260, 356, 368, 590, 1256, 1280
TaiI ACGT 3 cut(s) 469, 963, 1406
TaqI TCGA 3 cut(s) 67, 924, 980
TasI AATT 8 cut(s) 335, 348, 372, 551, 705, 926, 1144, 1439
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 2 cut(s) 100, 982
Tru1I TTAA 5 cut(s) 266, 375, 525, 1442, 1490
Tru9I TTAA 5 cut(s) 266, 375, 525, 1442, 1490
TscAI CASTG 4 cut(s) 61, 373, 691, 800
TseFI GTSAC 3 cut(s) 620, 819, 885
TseI GCWGC 4 cut(s) 798, 1058, 1124, 1259
Tsp45I GTSAC 3 cut(s) 620, 819, 885
TspDTI ATGAA 5 cut(s) 123, 591, 963, 1036, 1289
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 4 cut(s) 61, 373, 691, 800
Van91I CCANNNNNTGG 1 cut(s) 905
VneI GTGCAC 1 cut(s) 967
XapI RAATTY 2 cut(s) 348, 926
XceI RCATGY 2 cut(s) 18, 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 906
XmnI GAANNNNTTC 1 cut(s) 1370
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.