RchiOBHm_Chr2g0149481

1-acyl-sn-glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
67319194 .. 67323046
3853 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGACTAAAGGACTTCCCTCAGCCCTTTTGGTTAACTGTTTTTATAAAAGGAACTTGTTTCACCAGGGAGAGCTTATAGATGCACAGATGCTTCCTTTCCCTGGCAATGTTTCCTGTCCTCTTTCTAAGGATTTTGTCTGTGCAGTAAGACATGCACTCTCTTTTGTTCCAGCCATCTATGATATGCCAGTGGGTATTCCTAAAACTTCACTTCCACCTACACTTGGAAGACTCTTCAAAGAGGAACATTCTGTGGTAAGCCTAACATACTTTGGGGAATATTTCATATGA

Protein Analysis

96

Amino Acids

10.72

Weight (kDa)

7.74

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 101, 224
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 2 cut(s) 63, 100
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 2 cut(s) 65, 102
Bme1390I CCNGG 2 cut(s) 65, 102
BmrFI CCNGG 2 cut(s) 65, 102
BmsI GCATC 2 cut(s) 70, 78
BpiI GAAGAC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 64, 100
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 224
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 112
BseBI CCWGG 2 cut(s) 65, 102
BseDI CCNNGG 2 cut(s) 64, 100
BseLI CCNNNNNNNGG 2 cut(s) 101, 224
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 188
BsgI GTGCAG 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 101, 224
BspCNI CTCAG 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 112
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 64, 100
Bst2UI CCWGG 2 cut(s) 65, 102
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 19, 126
BstNI CCWGG 2 cut(s) 65, 102
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 63, 100
BstV2I GAAGAC 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 195
CviAII CATG 1 cut(s) 152
CviJI RGCY 4 cut(s) 23, 73, 173, 261
CviKI_1 RGCY 4 cut(s) 23, 73, 173, 261
DdeI CTNAG 2 cut(s) 19, 126
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 63, 100
FaeI CATG 1 cut(s) 155
FaiI YATR 8 cut(s) 45, 77, 153, 180, 185, 268, 287, 289
FatI CATG 1 cut(s) 151
FauNDI CATATG 1 cut(s) 287
Hin1II CATG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 1 cut(s) 231
HpaI GTTAAC 1 cut(s) 34
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 83, 143, 155
HpyF3I CTNAG 2 cut(s) 19, 126
Hsp92II CATG 1 cut(s) 155
KspAI GTTAAC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 50, 77, 87, 114, 127, 183, 201
LweI GCATC 2 cut(s) 70, 78
MboII GAAGA 2 cut(s) 226, 240
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 3 cut(s) 28, 129, 235
MseI TTAA 1 cut(s) 33
MspR9I CCNGG 2 cut(s) 65, 102
MvaI CCWGG 2 cut(s) 65, 102
NdeI CATATG 1 cut(s) 287
NlaIII CATG 1 cut(s) 155
NspI RCATGY 1 cut(s) 155
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PsiI TTATAA 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 63, 100
PspGI CCWGG 2 cut(s) 63, 100
SaqAI TTAA 1 cut(s) 33
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 2 cut(s) 65, 102
SetI ASST 2 cut(s) 75, 220
SfaNI GCATC 2 cut(s) 70, 78
SspI AATATT 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 63, 100
TaaI ACNGT 1 cut(s) 38
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 274
TspRI CASTG 1 cut(s) 195
XceI RCATGY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.