Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

69426391 .. 69427115

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTTTTTTAGTTTTTATTTCTGTGAAATACATAGTTGTTGTTTGTGTGATTGGAAATTTAATCAGGTTTTCGTGTTTTATTACTACTTTTTGTTGAACTTATCAATTAAAATTTTCTTGGTTGATGAAATTGAATTACAGAGAGGCCTGTCCTCATCTTTCATAGATGATGGATATCTTGAAATTATTGGTTCAAAAGATGATTTACTTTCCCAGAAGAAAAGGTGGATTCGCCTTGATCAGGTAAGAGAAATTCGCTTCAAGTTTATTGAGGATTCAGTTGAGGTTGTAAACATGATGATCGATGGAGTACTGTGGAAAAAAACCCCACTTGATGGTTTAGTCGAGATTGAAATCTCTTACAACTGTCAAGTTAACATTCTTGTTAAACAAGATTACTCAGCAAGAAGTATCCATGACTCATCGCAACCCTGTGGGTCAGAAACTGCTGATGATGACAATGCTGAAGGACGTAAGAAGAGTGGTGGAGCAAGCACATCAAGTTTCCTCATTGATGATAATGAGCTTGAAGAGAAATCTCAAGGACATAAAAAAATTGGTGCAGCAAGCAGCTTTAAAATCTTTGAGGAGGATGACATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

201

Amino Acids

23.19

Weight (kDa)

4.65

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	335
AcsI	RAATTY	3 cut(s)	56, 111, 252
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	241, 335
AgsI	TTSAA	7 cut(s)	97, 134, 182, 195, 262, 353, 530
AluBI	AGCT	2 cut(s)	526, 573
AluI	AGCT	2 cut(s)	526, 573
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	563, 570
ApoI	RAATTY	3 cut(s)	56, 111, 252
AseI	ATTAAT	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	575, 582
BccI	CCATC	3 cut(s)	164, 299, 329
BciVI	GTATCC	1 cut(s)	422
BclI	TGATCA	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	2 cut(s)	564, 571
BlsI	GCNGC	2 cut(s)	565, 572
BmcAI	AGTACT	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	525
Bsa29I	ATCGAT	1 cut(s)	303
BsaBI	GATNNNNATC	2 cut(s)	174, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 335
Bse8I	GATNNNNATC	2 cut(s)	174, 353
BseCI	ATCGAT	1 cut(s)	303
BseGI	GGATG	1 cut(s)	598
BseJI	GATNNNNATC	2 cut(s)	174, 353
BseLI	CCNNNNNNNGG	2 cut(s)	241, 335
BseMII	CTCAG	1 cut(s)	414
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	2 cut(s)	575, 582
BsgI	GTGCAG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	147
BshVI	ATCGAT	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	241, 335
BsnI	GGCC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	238, 300
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	413
BspDI	ATCGAT	1 cut(s)	303
BssMI	GATC	2 cut(s)	238, 300
Bst4CI	ACNGT	2 cut(s)	315, 368
Bst6I	CTCTTC	2 cut(s)	473, 525
BstC8I	GCNNGC	2 cut(s)	493, 568
BstDEI	CTNAG	1 cut(s)	400
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	598
BstKTI	GATC	2 cut(s)	241, 303
BstMBI	GATC	2 cut(s)	238, 300
BstV1I	GCAGC	2 cut(s)	575, 582
Bsu15I	ATCGAT	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	147
BsuTUI	ATCGAT	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	493, 568
CaiI	CAGNNNCTG	1 cut(s)	446
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	295, 416
CviJI	RGCY	3 cut(s)	147, 526, 573
CviKI_1	RGCY	3 cut(s)	147, 526, 573
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	1 cut(s)	400
DpnI	GATC	2 cut(s)	240, 302
DpnII	GATC	2 cut(s)	238, 300
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	473, 525
EarI	CTCTTC	2 cut(s)	473, 525
Eco147I	AGGCCT	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	176
FaeI	CATG	2 cut(s)	298, 419
FaiI	YATR	5 cut(s)	33, 164, 296, 417, 549
FatI	CATG	2 cut(s)	294, 415
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	564, 571
Fsp4HI	GCNGC	2 cut(s)	564, 571
GluI	GCNGC	2 cut(s)	564, 571
HaeIII	GGCC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	298, 419
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	229, 275, 419
HpaI	GTTAAC	1 cut(s)	376
Hpy166II	GTNNAC	2 cut(s)	292, 376
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	2 cut(s)	179, 346
Hpy8I	GTNNAC	2 cut(s)	292, 376
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	2 cut(s)	315, 368
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	1 cut(s)	563
HpyF3I	CTNAG	1 cut(s)	400
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	2 cut(s)	298, 419
Ksp22I	TGATCA	1 cut(s)	238
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	238, 300
LmnI	GCTCC	1 cut(s)	488
LpnPI	CCDG	5 cut(s)	50, 161, 227, 227, 445
Lsp1109I	GCAGC	2 cut(s)	575, 582
MaeII	ACGT	1 cut(s)	472
MalI	GATC	2 cut(s)	240, 302
MboI	GATC	2 cut(s)	238, 300
MboII	GAAGA	3 cut(s)	229, 490, 542
MluCI	AATT	9 cut(s)	56, 105, 111, 129, 134, 183, 252, 555, 601
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	7 cut(s)	137, 163, 265, 277, 518, 580, 583
MseI	TTAA	6 cut(s)	60, 108, 375, 387, 576, 600
NdeII	GATC	2 cut(s)	238, 300
NlaIII	CATG	2 cut(s)	298, 419
PceI	AGGCCT	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	229, 275
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	565, 572
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PshBI	ATTAAT	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	6 cut(s)	60, 108, 375, 387, 576, 600
SatI	GCNGC	2 cut(s)	564, 571
Sau3AI	GATC	2 cut(s)	238, 300
ScaI	AGTACT	1 cut(s)	312
SchI	GAGTC	1 cut(s)	413
SetI	ASST	7 cut(s)	69, 227, 246, 288, 475, 528, 575
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
Sse9I	AATT	9 cut(s)	56, 105, 111, 129, 134, 183, 252, 555, 601
SseBI	AGGCCT	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	315, 368
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	2 cut(s)	303, 345
TasI	AATT	9 cut(s)	56, 105, 111, 129, 134, 183, 252, 555, 601
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	229, 275
Tru1I	TTAA	6 cut(s)	60, 108, 375, 387, 576, 600
Tru9I	TTAA	6 cut(s)	60, 108, 375, 387, 576, 600
TseI	GCWGC	2 cut(s)	563, 570
TspDTI	ATGAA	2 cut(s)	141, 151
Van91I	CCANNNNNTGG	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	3 cut(s)	56, 111, 252
ZrmI	AGTACT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.