Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

70704972 .. 70707138

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATTGACGTGGCCAACAAATTTGGGCTTCCTAGCTACGTTTTCTACACCTCTAGAGCGGTAGATCTCAGGCTCGTGTTCCACCTCCAAGCCCTACGTGATGAAGAGAACAAGGACTTGATAGGAGCATATTTATGCTACGTTTTCCGAAGCAAATTAGGAAAAGAAGGCTTAAAGAAGGAAAGGGCTACTTTCAGCCCTAGACATGGTGTAACTATGATATGTGGCAGCAGCTTTGGCAGACTTAGCAGTTGTGGCAGCACTAGCTTTGGCTCTTTGTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

95

Amino Acids

10.59

Weight (kDa)

9.37

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	206
AjiI	CACGTC	1 cut(s)	10
AluBI	AGCT	3 cut(s)	36, 234, 267
AluI	AGCT	3 cut(s)	36, 234, 267
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	3 cut(s)	228, 231, 258
ApoI	RAATTY	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	14
BauI	CACGAG	1 cut(s)	74
BbvI	GCAGC	3 cut(s)	240, 243, 270
BfaI	CTAG	4 cut(s)	33, 54, 201, 264
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	229, 232, 259
BlsI	GCNGC	3 cut(s)	230, 233, 260
BmgBI	CACGTC	1 cut(s)	10
BsaAI	YACGTR	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	240, 243, 270
BshFI	GGCC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	206
BsnI	GGCC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	59
BssMI	GATC	1 cut(s)	64
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	68, 245
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 246, 255, 264
BstV1I	GCAGC	3 cut(s)	240, 243, 270
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	14
BtrI	CACGTC	1 cut(s)	10
CviAII	CATG	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	68, 245
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
FaeI	CATG	1 cut(s)	209
FaiI	YATR	5 cut(s)	130, 136, 207, 218, 223
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	229, 232, 259
Fsp4HI	GCNGC	3 cut(s)	229, 232, 259
FspBI	CTAG	4 cut(s)	33, 54, 201, 264
GluI	GCNGC	3 cut(s)	229, 232, 259
HaeIII	GGCC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	161, 172
HpyCH4IV	ACGT	4 cut(s)	9, 39, 97, 141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 246, 255, 264
HpyF3I	CTNAG	2 cut(s)	68, 245
HpySE526I	ACGT	4 cut(s)	9, 39, 97, 141
Hsp92II	CATG	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	1 cut(s)	55
Lsp1109I	GCAGC	3 cut(s)	240, 243, 270
MaeI	CTAG	4 cut(s)	33, 54, 201, 264
MaeII	ACGT	4 cut(s)	9, 39, 97, 141
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	66
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	2 cut(s)	20, 155
MluNI	TGGCCA	1 cut(s)	14
MnlI	CCTC	2 cut(s)	61, 95
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	133
Msp20I	TGGCCA	1 cut(s)	14
MwoI	GCNNNNNNNGC	4 cut(s)	237, 246, 255, 264
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	230, 233, 260
Ppu21I	YACGTR	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	229, 232, 259
Sau3AI	GATC	1 cut(s)	64
SetI	ASST	9 cut(s)	12, 38, 42, 53, 87, 100, 144, 236, 269
SmiMI	CAYNNNNRTG	1 cut(s)	133
Sse9I	AATT	2 cut(s)	20, 155
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	4 cut(s)	33, 54, 201, 264
TaiI	ACGT	4 cut(s)	12, 42, 100, 144
TasI	AATT	2 cut(s)	20, 155
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseI	GCWGC	3 cut(s)	228, 231, 258
TspDTI	ATGAA	1 cut(s)	117
XapI	RAATTY	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	53
XspI	CTAG	4 cut(s)	33, 54, 201, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.