RchiOBHm_Chr2g0154131

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
71363970 .. 71367346
3377 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGATGATTCTGAATTCGGGTTTCATGATGGAGAACGAGGTGAGTTGCTTACCGCACACACCGGAGGAGGAGAAGCGGATCATTGATGAATTGGGCGGTCAATTTGAAGCCAATGTCAAACAAGGCAACTTGTTCTACGTTATTTCTAATAGGTGGTACTCAAGCCAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.63

Weight (kDa)

4.64

Isoelectric Point (pI)

69.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029779)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0154131
rosa_samantha Rh1DG126000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 53, 76, 96
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 52
BccI CCATC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 80, 83
BsiSI CCGG 1 cut(s) 62
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 3 cut(s) 53, 76, 96
BspHI TCATGA 1 cut(s) 24
BspPI GGATC 1 cut(s) 86
BssMI GATC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 167
CciI TCATGA 1 cut(s) 24
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 110, 165, 169
CviKI_1 RGCY 3 cut(s) 110, 165, 169
CviQI GTAC 1 cut(s) 157
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
EcoRI GAATTC 1 cut(s) 13
FaeI CATG 1 cut(s) 28
FaiI YATR 1 cut(s) 26
FatI CATG 1 cut(s) 24
HapII CCGG 1 cut(s) 62
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 1 cut(s) 75
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MluCI AATT 3 cut(s) 13, 89, 101
MnlI CCTC 3 cut(s) 31, 58, 61
MspI CCGG 1 cut(s) 62
NdeII GATC 1 cut(s) 78
NlaIII CATG 1 cut(s) 28
PagI TCATGA 1 cut(s) 24
PfeI GAWTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 78
SetI ASST 4 cut(s) 42, 141, 155, 171
SgeI CNNG 6 cut(s) 30, 37, 49, 74, 134, 142
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 3 cut(s) 13, 89, 101
SsiI CCGC 3 cut(s) 53, 76, 96
TaiI ACGT 1 cut(s) 141
TasI AATT 3 cut(s) 13, 89, 101
TfiI GAWTC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 13, 102
XapI RAATTY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.