RchiOBHm_Chr2g0154241

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029895
Physical Location & Seq
Reverse (-)
71447005 .. 71447935
931 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
ATGTCATTATTCACCATTACAGCCGCTGAAGAAATTGGAGCCCCCATAGTACTCTTCAATACTGTTGCTGCATCCACTTACATGGGGTTCAAACAATTTCGGACTTTGGTCCAAAAAGGGCTTGCACCATTAAAAGATGAGAGCTGTCTCACAAATGGTTTCCTGGACAAAGTAATAGATTGGATTCCCGGAATGAAAGATATTCGTTTAAAGGATCTTCCATCCTTTTTTCGAACTACAGATCCAAATGACACCGTCTTTAACTTCGTCATAGAAGTGATGGACAAAGTTCATAAAGCTGATGCACTCGTGTTTCTTACATTTGATGCGTTGGAACAAGATGTTTTGGAGGCTCTATCATCTATATTTGATCCGTCACTTGTTTGTGCAATTGGCCCTCTCGAATTACTTCTCAGTCAGATTCCGGATGACCCTTTGAAGCATATCGGATACAGCCTGTGCAAAGAAGAAATAAAGTGCTTAGAATGGCTGGAGAACAAAGCGCAAAATTCAGTTGTTTATGTGAATTTTGGAAGCATAGCTGTCTTGACACCAAAACAGCTTGTAGAGTTTGGTTGGGGACTTGCAAATACCAAGTTTCATATCTTCTGGGTAATTAGGCCTGATCTTGTTATTGGTGAATCAGCTATTCTGCCGCCTGAGTTGGTAGCTGAAACTAAGGAAAGAGGCCTAATAGCAAGTTGGTGCCCACAGGAGCAAGTCCTTAACCATCCATCAGTTGGTGGATTTTTAACACACTGCGGCTGGAATTCGACCATTGAGAGTCTAACGGCTGGAGTGCCTATGCTCTGTTGGCCATTCTTTGGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

277

Amino Acids

30.8

Weight (kDa)

4.74

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 164 - 277 1.4e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029895)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0154241
rosa_samantha Rh2BG519300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 705
AccB7I CCANNNNNTGG 2 cut(s) 740, 824
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 3 cut(s) 24, 656, 762
AclWI GGATC 3 cut(s) 222, 236, 365
AcoI YGGCCR 1 cut(s) 815
AcsI RAATTY 3 cut(s) 508, 526, 769
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 740, 824
AgsI TTSAA 3 cut(s) 58, 91, 439
AjnI CCWGG 1 cut(s) 162
AloI GAACNNNNNNTCC 2 cut(s) 226, 258
AluBI AGCT 6 cut(s) 144, 299, 542, 562, 647, 671
AluI AGCT 6 cut(s) 144, 299, 542, 562, 647, 671
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 3 cut(s) 222, 236, 365
AlwNI CAGNNNCTG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 4 cut(s) 394, 620, 688, 815
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 3 cut(s) 508, 526, 769
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 109, 395
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 4, 650
AsuII TTCGAA 1 cut(s) 232
AvaII GGWCC 1 cut(s) 109
BaeGI GKGCMC 1 cut(s) 710
BalI TGGCCA 1 cut(s) 817
BanI GGYRCC 1 cut(s) 705
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 1 cut(s) 308
BbvI GCAGC 1 cut(s) 55
BccI CCATC 4 cut(s) 229, 274, 738, 742
BceAI ACGGC 1 cut(s) 807
BciT130I CCWGG 1 cut(s) 164
BciVI GTATCC 1 cut(s) 443
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 832
BfmI CTRYAG 1 cut(s) 237
BfuI GTATCC 1 cut(s) 443
BisI GCNGC 4 cut(s) 24, 69, 656, 763
BlsI GCNGC 4 cut(s) 25, 70, 657, 764
BmcAI AGTACT 1 cut(s) 51
Bme1390I CCNGG 2 cut(s) 164, 189
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 109, 395
BmiI GGNNCC 2 cut(s) 40, 707
BmrFI CCNGG 2 cut(s) 164, 189
BmsI GCATC 3 cut(s) 80, 292, 316
BoxI GACNNNNGTC 1 cut(s) 107
BpmI CTGGAG 2 cut(s) 512, 816
Bpu14I TTCGAA 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 2 cut(s) 740, 824
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 1 cut(s) 164
BseGI GGATG 4 cut(s) 71, 221, 433, 730
BseLI CCNNNNNNNGG 2 cut(s) 740, 824
BseMII CTCAG 2 cut(s) 427, 651
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 4 cut(s) 396, 622, 690, 817
BshNI GGYRCC 1 cut(s) 705
BsiSI CCGG 2 cut(s) 189, 425
BslFI GGGAC 1 cut(s) 594
BslI CCNNNNNNNGG 2 cut(s) 740, 824
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 594
BsnI GGCC 4 cut(s) 396, 622, 690, 817
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 43, 710
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 4 cut(s) 214, 241, 370, 625
BspACI CCGC 3 cut(s) 24, 656, 762
BspANI GGCC 4 cut(s) 396, 622, 690, 817
BspCNI CTCAG 2 cut(s) 426, 652
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 40, 707
BspPI GGATC 3 cut(s) 222, 236, 365
BspT104I TTCGAA 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 705
BssMI GATC 4 cut(s) 214, 241, 370, 625
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 64, 256
Bst6I CTCTTC 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 4 cut(s) 413, 481, 660, 678
BstF5I GGATG 4 cut(s) 71, 221, 433, 730
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 4 cut(s) 217, 244, 373, 628
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 214, 241, 370, 625
BstMWI GCNNNNNNNGC 1 cut(s) 814
BstNI CCWGG 1 cut(s) 164
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 162, 187
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 214, 241
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 214, 241
BsuI GTATCC 1 cut(s) 443
BsuRI GGCC 4 cut(s) 396, 622, 690, 817
BtsCI GGATG 4 cut(s) 71, 221, 433, 730
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 1 cut(s) 757
Cac8I GCNNGC 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 505
Cfr13I GGNCC 2 cut(s) 109, 395
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 82
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 4 cut(s) 413, 481, 660, 678
DpnI GATC 4 cut(s) 216, 243, 372, 627
DpnII GATC 4 cut(s) 214, 241, 370, 625
DraI TTTAAA 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 815
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco147I AGGCCT 2 cut(s) 622, 690
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 1 cut(s) 85
FaqI GGGAC 1 cut(s) 594
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 4 cut(s) 24, 69, 656, 763
FokI GGATG 4 cut(s) 58, 208, 440, 717
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 4 cut(s) 24, 69, 656, 763
FspBI CTAG 1 cut(s) 832
GlaI GCGC 1 cut(s) 504
GluI GCNGC 4 cut(s) 24, 69, 656, 763
GsuI CTGGAG 2 cut(s) 512, 816
HaeIII GGCC 4 cut(s) 396, 622, 690, 817
HapII CCGG 2 cut(s) 189, 425
HhaI GCGC 1 cut(s) 505
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 4 cut(s) 184, 421, 641, 784
HpaII CCGG 2 cut(s) 189, 425
HphI GGTGA 2 cut(s) 4, 650
Hpy188I TCNGA 3 cut(s) 102, 420, 449
Hpy188III TCNNGA 3 cut(s) 401, 425, 547
HpyCH4III ACNGT 2 cut(s) 64, 256
HpyCH4V TGCA 6 cut(s) 71, 125, 305, 389, 462, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 814
HpyF3I CTNAG 4 cut(s) 413, 481, 660, 678
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 503
Kpn2I TCCGGA 1 cut(s) 424
Kzo9I GATC 4 cut(s) 214, 241, 370, 625
LmnI GCTCC 2 cut(s) 38, 715
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 3 cut(s) 80, 292, 316
MaeI CTAG 1 cut(s) 832
MaeIII GTNAC 2 cut(s) 375, 827
MalI GATC 4 cut(s) 216, 243, 372, 627
MboI GATC 4 cut(s) 214, 241, 370, 625
MboII GAAGA 5 cut(s) 41, 46, 209, 479, 598
MfeI CAATTG 1 cut(s) 390
MflI RGATCY 2 cut(s) 214, 241
MhlI GDGCHC 2 cut(s) 43, 710
MlsI TGGCCA 1 cut(s) 817
MluCI AATT 8 cut(s) 33, 95, 390, 404, 508, 526, 615, 769
MluNI TGGCCA 1 cut(s) 817
MlyI GAGTC 1 cut(s) 793
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 3 cut(s) 343, 408, 680
Mox20I TGGCCA 1 cut(s) 817
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 408
MscI TGGCCA 1 cut(s) 817
MseI TTAA 5 cut(s) 131, 209, 261, 726, 752
MslI CAYNNNNRTG 2 cut(s) 80, 275
Msp20I TGGCCA 1 cut(s) 817
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 2 cut(s) 189, 425
MspR9I CCNGG 2 cut(s) 164, 189
MunI CAATTG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 814
NciI CCSGG 1 cut(s) 189
NdeII GATC 4 cut(s) 214, 241, 370, 625
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 2 cut(s) 40, 707
NmuCI GTSAC 2 cut(s) 375, 827
NspV TTCGAA 1 cut(s) 232
PceI AGGCCT 2 cut(s) 622, 690
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 3 cut(s) 184, 421, 641
PflFI GACNNNGTC 1 cut(s) 254
PflMI CCANNNNNTGG 2 cut(s) 740, 824
PfoI TCCNGGA 2 cut(s) 162, 187
PkrI GCNGC 4 cut(s) 25, 70, 657, 764
PleI GAGTC 1 cut(s) 792
PpsI GAGTC 1 cut(s) 792
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 40, 707
PspPI GGNCC 2 cut(s) 109, 395
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 2 cut(s) 214, 241
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 2 cut(s) 80, 275
SaqAI TTAA 5 cut(s) 131, 209, 261, 726, 752
SatI GCNGC 4 cut(s) 24, 69, 656, 763
Sau3AI GATC 4 cut(s) 214, 241, 370, 625
Sau96I GGNCC 2 cut(s) 109, 395
ScaI AGTACT 1 cut(s) 51
SchI GAGTC 1 cut(s) 793
ScrFI CCNGG 2 cut(s) 164, 189
SduI GDGCHC 2 cut(s) 43, 710
SetI ASST 6 cut(s) 146, 301, 544, 564, 649, 673
SfaNI GCATC 3 cut(s) 80, 292, 316
SfcI CTRYAG 1 cut(s) 237
SfuI TTCGAA 1 cut(s) 232
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 80, 275
Sse9I AATT 8 cut(s) 33, 95, 390, 404, 508, 526, 615, 769
SseBI AGGCCT 2 cut(s) 622, 690
SsiI CCGC 3 cut(s) 24, 656, 762
SspMI CTAG 1 cut(s) 832
StuI AGGCCT 2 cut(s) 622, 690
StyD4I CCNGG 2 cut(s) 162, 187
TaaI ACNGT 2 cut(s) 64, 256
TaqI TCGA 3 cut(s) 232, 402, 773
TasI AATT 8 cut(s) 33, 95, 390, 404, 508, 526, 615, 769
TatI WGTACW 1 cut(s) 49
TauI GCSGC 3 cut(s) 26, 658, 765
TfiI GAWTC 3 cut(s) 184, 421, 641
Tru1I TTAA 5 cut(s) 131, 209, 261, 726, 752
Tru9I TTAA 5 cut(s) 131, 209, 261, 726, 752
TscAI CASTG 1 cut(s) 764
TseFI GTSAC 2 cut(s) 375, 827
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 2 cut(s) 375, 827
TspDTI ATGAA 3 cut(s) 209, 281, 590
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 764
Tth111I GACNNNGTC 1 cut(s) 254
Van91I CCANNNNNTGG 2 cut(s) 740, 824
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 3 cut(s) 508, 526, 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 1 cut(s) 832
ZrmI AGTACT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.