RchiOBHm_Chr2g0155461

copper-transporting ATPase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
72334508 .. 72335197
690 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGTATAACCACAACACAGGTATAGTGGGGCTTGTTAAGTCAGCTCAGATGGCAAAAGCTCCTGTTCAGAAGTTTGCTGACCGCATTTCTAAATTCTTTGTGCCACTGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTACAATTGGGAAGCCACTGGTTGTTAACCCACGACTCATGA

Protein Analysis

60

Amino Acids

6.68

Weight (kDa)

8.98

Isoelectric Point (pI)

23.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 92
AluBI AGCT 2 cut(s) 44, 59
AluI AGCT 2 cut(s) 44, 59
ApoI RAATTY 1 cut(s) 92
BccI CCATC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
Bse1I ACTGG 2 cut(s) 111, 164
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 111, 164
BslFI GGGAC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 151
BspACI CCGC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 58
BspHI TCATGA 1 cut(s) 179
BsrI ACTGG 2 cut(s) 111, 164
BstDEI CTNAG 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 50
BtsIMutI CAGTG 2 cut(s) 104, 157
CciI TCATGA 1 cut(s) 179
CviAII CATG 1 cut(s) 180
CviJI RGCY 4 cut(s) 31, 44, 59, 156
CviKI_1 RGCY 4 cut(s) 31, 44, 59, 156
DdeI CTNAG 1 cut(s) 45
FaeI CATG 1 cut(s) 183
FaiI YATR 3 cut(s) 6, 23, 181
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 179
Hin1II CATG 1 cut(s) 183
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 2 cut(s) 139, 176
HpaI GTTAAC 1 cut(s) 168
Hpy166II GTNNAC 2 cut(s) 112, 168
Hpy188I TCNGA 2 cut(s) 48, 69
Hpy188III TCNNGA 1 cut(s) 180
Hpy8I GTNNAC 2 cut(s) 112, 168
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 1 cut(s) 183
KspAI GTTAAC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 3, 75, 92, 120, 145
MfeI CAATTG 1 cut(s) 146
MluCI AATT 2 cut(s) 92, 146
MlyI GAGTC 2 cut(s) 133, 170
MseI TTAA 2 cut(s) 36, 167
MunI CAATTG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 50
NlaIII CATG 1 cut(s) 183
PagI TCATGA 1 cut(s) 179
PleI GAGTC 2 cut(s) 133, 170
PpsI GAGTC 2 cut(s) 133, 170
SaqAI TTAA 2 cut(s) 36, 167
SchI GAGTC 2 cut(s) 133, 170
SetI ASST 3 cut(s) 22, 46, 61
SgeI CNNG 7 cut(s) 30, 44, 74, 119, 142, 147, 172
Sse9I AATT 2 cut(s) 92, 146
SsiI CCGC 1 cut(s) 82
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 92, 146
Tru1I TTAA 2 cut(s) 36, 167
Tru9I TTAA 2 cut(s) 36, 167
TscAI CASTG 2 cut(s) 111, 164
TspRI CASTG 2 cut(s) 111, 164
XapI RAATTY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.