RchiOBHm_Chr2g0155941

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
72771160 .. 72771471
312 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGGATCCAGACACAGCGGGATCCACATTGCCAACCGATTCGGGTGATGGCTTTAATATGAAGTTCTCATTGGGAACCCCGCCCTTAGATATTTATGCAGCTGCAGATACAGGCAGCGATCTGGTATGGACGCAATGTCAGCCGTGTCAAGCTTGTTACGAGACCAAATATGCCCTCTTGGCGATGCCAGACCACCAAACTATTCACCAAACATATGTAGAAAATTTCCTGAAGGAAATTGTGATTATCGTGTCACGTATGCAGACAAGGCATCCTCTACAGGCGTATTGGCAAAAGAAACAATTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.59

Weight (kDa)

5.06

Isoelectric Point (pI)

25.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 19 - 57 1.1e-10 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 80
AclWI GGATC 3 cut(s) 12, 15, 28
AcsI RAATTY 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 251
AhdI GACNNNNNGTC 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 2 cut(s) 101, 152
AluI AGCT 2 cut(s) 101, 152
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 3 cut(s) 12, 15, 28
ApeKI GCWGC 3 cut(s) 98, 101, 114
ApoI RAATTY 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 56, 197
BamHI GGATCC 2 cut(s) 4, 20
BbvI GCAGC 3 cut(s) 88, 110, 126
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 2 cut(s) 102, 278
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 3 cut(s) 99, 102, 115
BlsI GCNGC 3 cut(s) 100, 103, 116
BmeRI GACNNNNNGTC 1 cut(s) 135
BmiI GGNNCC 3 cut(s) 6, 22, 76
BmsI GCATC 2 cut(s) 174, 280
BsaAI YACGTR 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 155
Bse3DI GCAATG 2 cut(s) 26, 140
BseGI GGATG 1 cut(s) 271
BseMI GCAATG 2 cut(s) 26, 140
BseXI GCAGC 3 cut(s) 88, 110, 126
BsmAI GTCTC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 4, 20, 118
BspACI CCGC 2 cut(s) 17, 80
BspLI GGNNCC 3 cut(s) 6, 22, 76
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 3 cut(s) 12, 15, 28
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 26, 140
BssMI GATC 3 cut(s) 4, 20, 118
BstBAI YACGTR 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 7, 23, 121
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 3 cut(s) 4, 20, 118
BstMWI GCNNNNNNNGC 3 cut(s) 139, 179, 268
BstSFI CTRYAG 2 cut(s) 102, 278
BstV1I GCAGC 3 cut(s) 88, 110, 126
BstX2I RGATCY 2 cut(s) 4, 20
BstYI RGATCY 2 cut(s) 4, 20
BtgZI GCGATG 1 cut(s) 197
BtsCI GGATG 1 cut(s) 271
CseI GACGC 1 cut(s) 139
CviJI RGCY 4 cut(s) 51, 101, 142, 152
CviKI_1 RGCY 4 cut(s) 51, 101, 142, 152
DdeI CTNAG 1 cut(s) 85
DpnI GATC 3 cut(s) 6, 22, 120
DpnII GATC 3 cut(s) 4, 20, 118
DriI GACNNNNNGTC 1 cut(s) 135
Eam1105I GACNNNNNGTC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 251
FaiI YATR 7 cut(s) 59, 96, 127, 171, 214, 216, 260
FauI CCCGC 2 cut(s) 10, 87
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 99, 102, 115
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 99, 102, 115
GluI GCNGC 3 cut(s) 99, 102, 115
HgaI GACGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 1 cut(s) 38
HphI GGTGA 2 cut(s) 56, 197
Hpy188III TCNNGA 2 cut(s) 8, 229
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 98, 104, 262
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 179, 268
HpyF3I CTNAG 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 256
Kzo9I GATC 3 cut(s) 4, 20, 118
LpnPI CCDG 6 cut(s) 21, 96, 107, 201, 242, 266
Lsp1109I GCAGC 3 cut(s) 88, 110, 126
LweI GCATC 2 cut(s) 174, 280
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 155, 252
MalI GATC 3 cut(s) 6, 22, 120
MboI GATC 3 cut(s) 4, 20, 118
MflI RGATCY 2 cut(s) 4, 20
MluCI AATT 3 cut(s) 223, 237, 302
MnlI CCTC 2 cut(s) 185, 285
MseI TTAA 1 cut(s) 54
MspA1I CMGCKG 2 cut(s) 17, 101
MwoI GCNNNNNNNGC 3 cut(s) 139, 179, 268
NdeI CATATG 1 cut(s) 214
NdeII GATC 3 cut(s) 4, 20, 118
NlaIV GGNNCC 3 cut(s) 6, 22, 76
NmuCI GTSAC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 3 cut(s) 100, 103, 116
Ppu21I YACGTR 1 cut(s) 257
PspN4I GGNNCC 3 cut(s) 6, 22, 76
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 2 cut(s) 4, 20
PvuII CAGCTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 3 cut(s) 99, 102, 115
Sau3AI GATC 3 cut(s) 4, 20, 118
SetI ASST 4 cut(s) 103, 154, 259, 310
SfaNI GCATC 2 cut(s) 174, 280
SfcI CTRYAG 2 cut(s) 102, 278
Sse9I AATT 3 cut(s) 223, 237, 302
SsiI CCGC 2 cut(s) 17, 80
TaiI ACGT 1 cut(s) 259
TasI AATT 3 cut(s) 223, 237, 302
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 252
TseI GCWGC 3 cut(s) 98, 101, 114
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 1 cut(s) 74
XapI RAATTY 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.