Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

72823602 .. 72823799

Gene Structure 198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTATGCTTCTGGTGGGAAGTGGGATGACGTGGCAAAGGCTAGGATGACAATGAGAAAGGCAGCAGTGAAGAAGGAAGCCGGGTGCTGTCGGGTCACCATGAAAGATGGAGTTCATGTTTTTGTAGCTGGGGACAAATTACATCCGGAGAAAGATTTGATCAAGGAACTTAATAAGAAAATGAGGGATGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

65

Amino Acids

7.22

Weight (kDa)

9.6

Isoelectric Point (pI)

20.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	1 - 32	6.3e-06	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	31
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	82
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
BseAI	TCCGGA	1 cut(s)	145
BseGI	GGATG	4 cut(s)	31, 51, 142, 193
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	81, 146
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	159
BspEI	TCCGGA	1 cut(s)	145
BssMI	GATC	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	4 cut(s)	31, 51, 142, 193
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	74
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	4 cut(s)	31, 51, 142, 193
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
CviAII	CATG	2 cut(s)	100, 116
CviJI	RGCY	3 cut(s)	41, 80, 128
CviKI_1	RGCY	3 cut(s)	41, 80, 128
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	94
FaeI	CATG	2 cut(s)	103, 119
FaiI	YATR	3 cut(s)	6, 101, 117
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	99, 115
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	3 cut(s)	38, 58, 129
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	63
GsaI	CCCAGC	1 cut(s)	132
HapII	CCGG	2 cut(s)	81, 146
Hin1II	CATG	2 cut(s)	103, 119
HpaII	CCGG	2 cut(s)	81, 146
HphI	GGTGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	103, 119
Kpn2I	TCCGGA	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	4 cut(s)	94, 114, 159, 177
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	1 cut(s)	137
MnlI	CCTC	1 cut(s)	177
MroI	TCCGGA	1 cut(s)	145
MseI	TTAA	1 cut(s)	171
MspI	CCGG	2 cut(s)	81, 146
MspR9I	CCNGG	1 cut(s)	82
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	103, 119
NmuCI	GTSAC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	64
PspEI	GGTNACC	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	2 cut(s)	33, 130
SfaNI	GCATC	1 cut(s)	178
Sse9I	AATT	1 cut(s)	137
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	80
TaiI	ACGT	1 cut(s)	33
TasI	AATT	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	104, 116
TspRI	CASTG	1 cut(s)	72
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.