RchiOBHm_Chr2g0156541

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
73141645 .. 73142737
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGGCAGGTGAGCTTGTTAGGGTAATGCAGTGGCAGGGACGATGTTTCGGGAGGGTATGGACTGCCATTGATATATTCAATATCCTTGTTCTTGGAAGTCCAATTGAATGGGATCAGTTTAGTGATACATCCAGTGACCCTCATACCCCGGCCCCGTTAATTAAGGGACTTTGGTATAGTCATATCGGTTGGTTCTATATATGCTTAATTGCTTATCATTCTCGGTTTGGGAGTGATGAATTAGCAAAATTACTAAAGAACGTTGGAGATTTAAAGAAGCAGTGGTACTATAGGTTTCTTCATTACACATACATCTTTCACATAGTTTTTCTTGGAGCTGTACGTATTGTATGCAGTAGGAGGATTACCTTTATAGTTTGGGGACTGGGTGTGAGGCTGGTATATGTTTACCATGTAACTTTTCAATAA

Protein Analysis

142

Amino Acids

16.74

Weight (kDa)

9.24

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 261
AclWI GGATC 1 cut(s) 120
AfaI GTAC 2 cut(s) 287, 342
AgsI TTSAA 3 cut(s) 79, 107, 425
AluBI AGCT 2 cut(s) 13, 338
AluI AGCT 2 cut(s) 13, 338
AlwI GGATC 1 cut(s) 120
AoxI GGCC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
BcnI CCSGG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 149
BmrI ACTGGG 1 cut(s) 395
BmuI ACTGGG 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 132, 390
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 132, 390
BshFI GGCC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 3 cut(s) 51, 180, 396
BsmFI GGGAC 3 cut(s) 51, 180, 396
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 112
BspANI GGCC 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 1 cut(s) 120
BsrI ACTGG 2 cut(s) 132, 390
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 344
BstF5I GGATG 1 cut(s) 128
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 289
BstSNI TACGTA 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 2 cut(s) 35, 287
BtsIMutI CAGTG 3 cut(s) 35, 139, 287
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 286, 341
CviAII CATG 1 cut(s) 413
CviJI RGCY 4 cut(s) 13, 152, 338, 397
CviKI_1 RGCY 4 cut(s) 13, 152, 338, 397
CviQI GTAC 2 cut(s) 286, 341
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DraI TTTAAA 1 cut(s) 273
Eco105I TACGTA 1 cut(s) 344
FaeI CATG 1 cut(s) 416
FaqI GGGAC 3 cut(s) 51, 180, 396
FatI CATG 1 cut(s) 412
FokI GGATG 1 cut(s) 115
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 416
HpaII CCGG 1 cut(s) 149
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 409
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 409
HpyCH4IV ACGT 2 cut(s) 261, 343
HpyCH4V TGCA 2 cut(s) 28, 354
HpySE526I ACGT 2 cut(s) 261, 343
Hsp92II CATG 1 cut(s) 416
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 5 cut(s) 20, 145, 162, 371, 383
MaeII ACGT 2 cut(s) 261, 343
MaeIII GTNAC 2 cut(s) 134, 415
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 290
MfeI CAATTG 1 cut(s) 102
MluCI AATT 5 cut(s) 102, 159, 207, 239, 248
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 4 cut(s) 45, 150, 354, 387
MseI TTAA 4 cut(s) 158, 162, 206, 272
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 149
MunI CAATTG 1 cut(s) 102
NciI CCSGG 1 cut(s) 149
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 134
PacI TTAATTAA 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 344
Psp1406I AACGTT 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 151
RsaI GTAC 2 cut(s) 287, 342
RsaNI GTAC 2 cut(s) 286, 341
SaqAI TTAA 4 cut(s) 158, 162, 206, 272
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 149
SetI ASST 7 cut(s) 10, 15, 264, 296, 340, 346, 371
SfcI CTRYAG 1 cut(s) 289
SnaBI TACGTA 1 cut(s) 344
Sse9I AATT 5 cut(s) 102, 159, 207, 239, 248
StyD4I CCNGG 1 cut(s) 147
TaiI ACGT 2 cut(s) 264, 346
TasI AATT 5 cut(s) 102, 159, 207, 239, 248
Tru1I TTAA 4 cut(s) 158, 162, 206, 272
Tru9I TTAA 4 cut(s) 158, 162, 206, 272
TscAI CASTG 3 cut(s) 35, 139, 287
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 252, 290
TspRI CASTG 3 cut(s) 35, 139, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.