Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

73287192 .. 73289011

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATGATGAAGAAGATTGTCTCTTATCACCAACACCAAAAAAACCCAATAGAAAAATCAAGGAGGTCCAATTATTTTGGCGCAGGCAAGTATCTTTCACTTTGGAAGTATATTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGGCAGTTCTTGTTGCTAGCAAGAGATCCTTTCTCCGAAGGAAAAATTCACTAGACGCGACACGTGAGATTCTCGAAAGGTTGGATGCAAATCGAAAGGCAGAGGGTACATTCATGGTGTTTGCAAATATGAGTGGCAATAGTGCACAAGAAGTGTGTGAGAGAGTCCTTAGCCAGCCATTATTATCTGGTTTGCGGAGTGGAGGCAGTGAGGTTATAGTTATCCCTTCTTCGACTTACACTTTTGATGAAGAAACTCCAAGATGGCCTGAACTTCTCTCAAAACTTGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

147

Amino Acids

16.44

Weight (kDa)

9.59

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	206
AciI	CCGC	2 cut(s)	149, 343
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	193
AcvI	CACGTG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	209
AluBI	AGCT	2 cut(s)	122, 143
AluI	AGCT	2 cut(s)	122, 143
Alw21I	GWGCWC	2 cut(s)	133, 295
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	413
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	20
AsuNHI	GCTAGC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	295
BbrPI	CACGTG	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	133, 295
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	2 cut(s)	119, 405
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	165, 200, 442
BisI	GCNGC	2 cut(s)	141, 150
BlsI	GCNGC	2 cut(s)	142, 151
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmsI	GCATC	1 cut(s)	223
BmtI	GCTAGC	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	237
BseGI	GGATG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	133, 295
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	415
Bsp1286I	GDGCHC	2 cut(s)	133, 295
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	2 cut(s)	149, 343
BspANI	GGCC	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	206
BspOI	GCTAGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	168
BssMI	GATC	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	3 cut(s)	85, 166, 323
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 137, 146, 149
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	85, 166, 323
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	5 cut(s)	122, 143, 321, 325, 415
CviKI_1	RGCY	5 cut(s)	122, 143, 321, 325, 415
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	66
Eco72I	CACGTG	1 cut(s)	212
FaeI	CATG	1 cut(s)	265
FaiI	YATR	4 cut(s)	111, 263, 278, 365
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	141, 150
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	141, 150
FspBI	CTAG	3 cut(s)	165, 200, 442
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	2 cut(s)	141, 150
HaeIII	GGCC	1 cut(s)	415
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	217, 312
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	180, 384
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	236, 272, 293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 137, 146, 149
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	128, 148
LpnPI	CCDG	5 cut(s)	69, 159, 321, 335, 429
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	165, 200, 442
MaeII	ACGT	1 cut(s)	211
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	4 cut(s)	22, 25, 369, 410
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	133, 295
MluCI	AATT	2 cut(s)	70, 193
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	5 cut(s)	57, 130, 244, 344, 352
MspA1I	CMGCKG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	128, 137, 146, 149
NdeII	GATC	1 cut(s)	173
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	142, 151
PleI	GAGTC	1 cut(s)	320
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	320
Ppu21I	YACGTR	1 cut(s)	212
PspCI	CACGTG	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SatI	GCNGC	2 cut(s)	141, 150
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	133, 295
SetI	ASST	6 cut(s)	68, 124, 145, 214, 230, 363
SfaNI	GCATC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	70, 193
SsiI	CCGC	2 cut(s)	149, 343
SspMI	CTAG	3 cut(s)	165, 200, 442
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	3 cut(s)	222, 241, 380
TasI	AATT	2 cut(s)	70, 193
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	23, 250, 411
TspRI	CASTG	1 cut(s)	361
VneI	GTGCAC	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	193
XspI	CTAG	3 cut(s)	165, 200, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.