RchiOBHm_Chr2g0157501

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
73877776 .. 73878553
778 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGAGTCATTTTGTCAAATATGACACAACCTATTTATTAAATGGGTTAAGCGGGTTAGAAACGGGTAACCCGTTTAATAAATGGGTTGGATTTGGGTTTAAATTTAGGGTTGGATTTGGGTTTGTATCTTGCGACACGACAAATACCTTGATCCGACACGAACCCAACCCGACACGACCCAATGACCCATTGACAGCCCTAATCGCTCTCAAAGTTCTACTGTATATTGCCGGAGGAATGCCCTTTTTGGTTTGGGGAACGGGTGTGAGAACAGTAGCTTTTCAACATGCTATTTCTGGATCAAATAAATTCGATTTACCACTCTTGGGGACCCCAAGTAGGGATACTGAGGGTTGGCAAGATAACCACCATGCTTTTGAGCACTCGGCTAGGATTGGCTTGGAATGGTGGCAAATTGATGTTACCTGGAATGTCATAATTAAGACTACTTGGAGTTGGTGGTTTGCAACTGATCATCTAATTAACAAAACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

18.77

Weight (kDa)

7.95

Isoelectric Point (pI)

21.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 2 cut(s) 145, 307
AcsI RAATTY 2 cut(s) 101, 308
AfiI CCNNNNNNNGG 3 cut(s) 326, 339, 340
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw21I GWGCWC 1 cut(s) 384
AlwI GGATC 2 cut(s) 145, 307
ApoI RAATTY 2 cut(s) 101, 308
AspS9I GGNCC 1 cut(s) 330
AvaII GGWCC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 384
BciT130I CCWGG 1 cut(s) 427
BciVI GTATCC 1 cut(s) 337
BclI TGATCA 1 cut(s) 472
BfaI CTAG 1 cut(s) 390
BfuI GTATCC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 427
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 2 cut(s) 331, 332
BmrFI CCNGG 1 cut(s) 427
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 339, 340
BseBI CCWGG 1 cut(s) 427
BseLI CCNNNNNNNGG 3 cut(s) 326, 339, 340
BseMII CTCAG 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 384
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 3 cut(s) 326, 339, 340
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 3 cut(s) 150, 299, 472
BspACI CCGC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 331, 332
BspPI GGATC 2 cut(s) 145, 307
BssMI GATC 3 cut(s) 150, 299, 472
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 2 cut(s) 222, 274
BstDEI CTNAG 1 cut(s) 348
BstEII GGTNACC 1 cut(s) 65
BstKTI GATC 3 cut(s) 153, 302, 475
BstMBI GATC 3 cut(s) 150, 299, 472
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 425
BsuI GTATCC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 330
CviAII CATG 2 cut(s) 287, 371
CviJI RGCY 4 cut(s) 197, 278, 389, 399
CviKI_1 RGCY 4 cut(s) 197, 278, 389, 399
DdeI CTNAG 1 cut(s) 348
DpnI GATC 3 cut(s) 152, 301, 474
DpnII GATC 3 cut(s) 150, 299, 472
DraI TTTAAA 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 330
Eco91I GGTNACC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 330
EcoO65I GGTNACC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 425
FaeI CATG 2 cut(s) 290, 374
FaiI YATR 5 cut(s) 21, 225, 288, 372, 437
FaqI GGGAC 1 cut(s) 343
FatI CATG 2 cut(s) 286, 370
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 1 cut(s) 472
FspBI CTAG 1 cut(s) 390
HapII CCGG 1 cut(s) 231
Hin1II CATG 2 cut(s) 290, 374
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 231
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 297
HpyCH4III ACNGT 2 cut(s) 222, 274
HpyCH4V TGCA 1 cut(s) 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 2 cut(s) 290, 374
KflI GGGWCCC 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 3 cut(s) 150, 299, 472
LpnPI CCDG 4 cut(s) 244, 282, 412, 439
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 65, 421
MalI GATC 3 cut(s) 152, 301, 474
MboI GATC 3 cut(s) 150, 299, 472
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 5 cut(s) 101, 308, 414, 438, 480
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 3 cut(s) 67, 91, 178
MnlI CCTC 2 cut(s) 227, 343
MseI TTAA 6 cut(s) 38, 47, 75, 99, 441, 483
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 427
Mva1269I GAATGC 1 cut(s) 243
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 3 cut(s) 150, 299, 472
NlaIII CATG 2 cut(s) 290, 374
NlaIV GGNNCC 2 cut(s) 331, 332
NmeAIII GCCGAG 1 cut(s) 365
NspI RCATGY 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PctI GAATGC 1 cut(s) 243
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 425
PspEI GGTNACC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 331, 332
PspPI GGNCC 1 cut(s) 330
PspPPI RGGWCCY 1 cut(s) 330
SaqAI TTAA 6 cut(s) 38, 47, 75, 99, 441, 483
Sau3AI GATC 3 cut(s) 150, 299, 472
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 427
SduI GDGCHC 1 cut(s) 384
SetI ASST 4 cut(s) 32, 149, 280, 428
SinI GGWCC 1 cut(s) 330
Sse9I AATT 5 cut(s) 101, 308, 414, 438, 480
SsiI CCGC 1 cut(s) 51
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 425
TaaI ACNGT 2 cut(s) 222, 274
TaqI TCGA 1 cut(s) 312
TasI AATT 5 cut(s) 101, 308, 414, 438, 480
Tru1I TTAA 6 cut(s) 38, 47, 75, 99, 441, 483
Tru9I TTAA 6 cut(s) 38, 47, 75, 99, 441, 483
VpaK11BI GGWCC 1 cut(s) 330
XapI RAATTY 2 cut(s) 101, 308
XceI RCATGY 1 cut(s) 290
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.