Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

73973191 .. 73973553

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCCGGCTGGACATGGTCTCCGATCACGAACCAGAGACTTGTTCTCTAGGGCCTTCAGGAAGAAGGGTTACATCCCACTCTCGACTTACCTGAAGACCTACCGGATCGGCTATTTCGTCGACGTCAAGGTCAATGGCGCCATCCACAACGGTATGCCGATTAAGGTTACTAGGTCTACATTTGCTTGGCTTTGCTCACCATCAGGAATAATTGGATGTCTCTTTAGTCTGTCCTCTTATAAATTTTTGAGATATTTTTATTTGCTGCAGAAGTACTGCTCTAGTTTAATTAATGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

100

Amino Acids

11.51

Weight (kDa)

10.18

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 56	3.7e-18	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	2 cut(s)	120, 176
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	40, 113
AcyI	GRCGYC	2 cut(s)	123, 138
AfaI	GTAC	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	23, 30, 224
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	242
AseI	ATTAAT	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	2 cut(s)	149, 208
BcoDI	GTCTC	3 cut(s)	23, 30, 224
BfaI	CTAG	3 cut(s)	48, 171, 282
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
BmcAI	AGTACT	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	101
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaI	GGTCTC	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	4
BseGI	GGATG	3 cut(s)	72, 141, 221
BseXI	GCAGC	1 cut(s)	252
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	5, 103
BsmAI	GTCTC	3 cut(s)	23, 30, 224
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	23, 105
BspANI	GGCC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	2 cut(s)	23, 105
BssNI	GRCGYC	2 cut(s)	123, 138
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	123, 138
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	72, 141, 221
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	26, 108
BstMAI	GTCTC	3 cut(s)	23, 30, 224
BstMBI	GATC	2 cut(s)	23, 105
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	72, 141, 221
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	4 cut(s)	8, 53, 111, 190
CviKI_1	RGCY	4 cut(s)	8, 53, 111, 190
CviQI	GTAC	1 cut(s)	274
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	2 cut(s)	25, 107
DpnII	GATC	2 cut(s)	23, 105
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	23
Eco57I	CTGAAG	2 cut(s)	40, 113
EcoO109I	RGGNCCY	1 cut(s)	51
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
FaeI	CATG	1 cut(s)	17
FaiI	YATR	3 cut(s)	15, 155, 240
FatI	CATG	1 cut(s)	13
FblI	GTMKAC	2 cut(s)	120, 176
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	3 cut(s)	59, 128, 228
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	3 cut(s)	48, 171, 282
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	5, 103
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	5, 103
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	2 cut(s)	121, 177
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	4 cut(s)	27, 58, 82, 204
Hpy8I	GTNNAC	2 cut(s)	121, 177
Hpy99I	CGWCG	2 cut(s)	122, 125
HpyAV	CCTTC	2 cut(s)	58, 64
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	23, 105
LpnPI	CCDG	6 cut(s)	18, 43, 46, 104, 116, 189
Lsp1109I	GCAGC	1 cut(s)	252
MaeI	CTAG	3 cut(s)	48, 171, 282
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	68, 166
MalI	GATC	2 cut(s)	25, 107
MboI	GATC	2 cut(s)	23, 105
MboII	GAAGA	2 cut(s)	73, 106
MluCI	AATT	3 cut(s)	210, 242, 288
Mly113I	GGCGCC	1 cut(s)	138
MnlI	CCTC	1 cut(s)	244
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	3 cut(s)	162, 287, 291
MspI	CCGG	2 cut(s)	5, 103
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	138
NdeII	GATC	2 cut(s)	23, 105
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	139
PacI	TTAATTAA	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	6
PflFI	GACNNNGTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	267
PluTI	GGCGCC	1 cut(s)	141
PshBI	ATTAAT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	15
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	162, 287, 291
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	2 cut(s)	23, 105
Sau96I	GGNCC	1 cut(s)	51
ScaI	AGTACT	1 cut(s)	275
SetI	ASST	6 cut(s)	93, 101, 126, 132, 168, 176
SfcI	CTRYAG	1 cut(s)	266
SfoI	GGCGCC	1 cut(s)	139
SgrDI	CGTCGACG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	210, 242, 288
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	3 cut(s)	48, 171, 282
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	83, 120
TasI	AATT	3 cut(s)	210, 242, 288
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	3 cut(s)	162, 287, 291
Tru9I	TTAA	3 cut(s)	162, 287, 291
TseI	GCWGC	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	15
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	242
XmiI	GTMKAC	2 cut(s)	120, 176
XspI	CTAG	3 cut(s)	48, 171, 282
ZraI	GACGTC	1 cut(s)	124
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.