Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

74486885 .. 74489331

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGGTAGATGAAGCTCATGAAAGGTCTATCTCCACGGACATTTTATTGGGTCTCCTGAAAAAGTTAGGCCGTATTATATACTTTTTGAATCTGAAAATTTCTAGATCCAAAAACGCCGGCCTGAGCTGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

44

Amino Acids

4.89

Weight (kDa)

9.51

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	2 cut(s)	14, 126
AluI	AGCT	2 cut(s)	14, 126
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	99
AoxI	GGCC	2 cut(s)	67, 118
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	2 cut(s)	69, 120
BsiSI	CCGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	69, 120
Bso31I	GGTCTC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	69, 120
BspCNI	CTCAG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	16
BspPI	GGATC	1 cut(s)	99
BspTNI	GGTCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	69, 120
BtgI	CCRYGG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	118
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	116
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	4 cut(s)	14, 69, 120, 126
CviKI_1	RGCY	4 cut(s)	14, 69, 120, 126
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	56
FaeI	CATG	1 cut(s)	20
FaiI	YATR	3 cut(s)	18, 77, 79
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	69, 120
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	17, 55, 102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	104
LpnPI	CCDG	2 cut(s)	68, 130
Lsp1109I	GCAGC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	102
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	116
MspI	CCGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	126
NaeI	GCCGGC	1 cut(s)	118
NdeII	GATC	1 cut(s)	104
NgoMIV	GCCGGC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	20
PagI	TCATGA	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	104
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	104
SetI	ASST	3 cut(s)	16, 26, 128
SgeI	CNNG	5 cut(s)	29, 46, 67, 114, 129
Sse9I	AATT	1 cut(s)	96
SspMI	CTAG	1 cut(s)	102
TasI	AATT	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	24, 33
TspGWI	ACGGA	1 cut(s)	50
XapI	RAATTY	1 cut(s)	96
XbaI	TCTAGA	1 cut(s)	101
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.