RchiOBHm_Chr2g0158191

HAUS augmin-like complex subunit 2

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
74555998 .. 74556716
719 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCTGCTAGTGATTATAGAGCATTAACGTGCCTTACCTTTCCGGAAAGGGAATCGCGCCAGAAACAAAACTCATCGCTTTGCCATGAACTGTGGTGTTTTTCGGGCTTTTGGGGTCCTTCAGTTGCCGATTTCCAGTGGAGCCAGACATTTAAGGAGCCTCCTTCAGTATGGAAAGAAATCCTTCATCCAATTCCTGTTGCCTTAGCATCAGGCACCAAGTTTTTCAAAGCAATGTTGTTTGCAACACTTCAGCATCTCGGAGTAGGTCATTCTGATACCACTTCTCCTATCAGACTAGAGTTGACATTTACACCCATTAGGTAA

Protein Analysis

118

Amino Acids

13.24

Weight (kDa)

7.77

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS2 PF15003 31 - 89 1.1e-12 HAUS augmin-like complex subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AccII CGCG 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 73
AcuI CTGAAG 3 cut(s) 135, 180, 266
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 8, 35
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 22
BfaI CTAG 3 cut(s) 12, 39, 329
BisI GCNGC 2 cut(s) 9, 36
BlsI GCNGC 2 cut(s) 10, 37
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 4 cut(s) 147, 173, 189, 247
BmsI GCATC 2 cut(s) 248, 295
Bpu10I CCTNAGC 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 73
BseGI GGATG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 73
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 4 cut(s) 147, 173, 189, 247
BspT107I GGYRCC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 1 cut(s) 116
CviJI RGCY 5 cut(s) 8, 35, 138, 174, 190
CviKI_1 RGCY 5 cut(s) 8, 35, 138, 174, 190
DdeI CTNAG 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 3 cut(s) 135, 180, 266
EcoO109I RGGNCCY 1 cut(s) 146
FaeI CATG 1 cut(s) 119
FaiI YATR 4 cut(s) 21, 48, 117, 202
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 9, 36
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 9, 36
FspBI CTAG 3 cut(s) 12, 39, 329
GlaI GCGC 1 cut(s) 89
GluI GCNGC 2 cut(s) 9, 36
HapII CCGG 1 cut(s) 74
HhaI GCGC 1 cut(s) 90
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 3 cut(s) 293, 307, 326
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 159, 204, 224
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 73
LmnI GCTCC 3 cut(s) 23, 171, 187
LpnPI CCDG 6 cut(s) 87, 104, 179, 188, 228, 240
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 248, 295
MaeI CTAG 3 cut(s) 12, 39, 329
MaeII ACGT 1 cut(s) 59
MluCI AATT 1 cut(s) 222
MnlI CCTC 1 cut(s) 201
MroI TCCGGA 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 3 cut(s) 29, 56, 183
MslI CAYNNNNRTG 1 cut(s) 58
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 4 cut(s) 147, 173, 189, 247
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 10, 37
PpuMI RGGWCCY 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 146
PspN4I GGNNCC 4 cut(s) 147, 173, 189, 247
PspPI GGNCC 1 cut(s) 146
PspPPI RGGWCCY 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 58
SaqAI TTAA 3 cut(s) 29, 56, 183
SatI GCNGC 2 cut(s) 9, 36
Sau96I GGNCC 1 cut(s) 146
SetI ASST 5 cut(s) 37, 62, 71, 301, 356
SfaNI GCATC 2 cut(s) 248, 295
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 58
Sse9I AATT 1 cut(s) 222
SspMI CTAG 3 cut(s) 12, 39, 329
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 1 cut(s) 62
TasI AATT 1 cut(s) 222
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 29, 56, 183
Tru9I TTAA 3 cut(s) 29, 56, 183
TscAI CASTG 1 cut(s) 173
TseI GCWGC 2 cut(s) 8, 35
TspDTI ATGAA 3 cut(s) 17, 132, 206
TspRI CASTG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 3 cut(s) 12, 39, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.